Query= MSMg01no144_f23.b1 MSMg01no144_f23.b1 CHROMAT_FILE:
MSMg01no144_f23.b1 PHD_FILE: MSMg01no144_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:11 2005
(664 letters)
>mm_chr19_17457675_17458735
Length = 1061
Score = 1029 bits (532), Expect = 0.0
Identities = 628/666 (94%), Gaps = 15/666 (2%)
Strand = Plus / Plus
Query: 3 gaattcaccaacacttttgacgatacccaaaagtctaatgtaaattacttcaaacagtcc 62
||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 203 gaatttaccaacacttttgatgatacccaaaagtttaatgtaaattacttcatacagtcc 262
Query: 63 tggagggatggggagtcttcaggagccagagcaagcagctgtcgccatccagactctcca 122
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 tggagggatggggagtcttctggagccagagcaagcagctgtcgccatccagagtctcca 322
Query: 123 gatatcatcatggtgtctgtgaaacatttaaaatggttagttcagacacaaaggcagaca 182
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 323 gatatcctcatggtgtctgtgaaacatttaaaatggctagttcagacacaaaggcagaca 382
Query: 183 taccagcaagagtacaacaactcccaattaggcagtcccatcaccccgtgctccaacatc 242
||| ||||||||||||| |||||||||||||||||||||||| | || ||||||||||
Sbjct: 383 tac---caagagtacaacagctcccaattaggcagtcccatcacactgtcctccaacatc 439
Query: 243 tatggctataaacactagaagagctatttaaaagaacttgttcttgcaatgcatacttac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatggctataaacactagaagagctatttaaaagaacttgttcttgcaatgcatacttac 499
Query: 303 aatctgaatattcaaacagtagaggcacagtgttttaataacaatgtccaggacttgctc 362
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 aatctgaatattcaaacagtagaggcacagtgctttaataacaatgtccaggacttgctc 559
Query: 363 agtgcctcaggggcaccccc----actttcccttatctgtctcaatatcagtttctactg 418
||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtgcctcaggggga-----ggtgactttcccttatctgtctcaatatcagtttctactg 614
Query: 419 ctctaacaatctctgaaaatagatgtttcagatgacacatgcttacaatgtcaacacttg 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctctaacaatctctgaaactagatgtttcagatgacacatgcttacaatgtcaacacttg 674
Query: 479 gtcagctgaggctaacttggg-tactatagcaaggtactattttgaaatcaaaacacaaa 537
| |||||||||| |||||||| ||| ||| | |||| || ||||||||||||||||||||
Sbjct: 675 ggcagctgaggccaacttgggctac-atatcgaggtgctgttttgaaatcaaaacacaaa 733
Query: 538 tatttccacaaaatatgatccctttgccaacatagttgtttcttttatatttttgccata 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tatttccacaaaatatgatccctttgccaacatagttgtttcttttatatttttgccata 793
Query: 598 tcaagggctgtagctgctgtttggatgtgtgtatttt-gattatggccacagtgcgttgt 656
||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 794 tcaagggctgtagctgctgtttggatgtgtgtatttttggttatggccacagtgtgttgt 853
Query: 657 ttgata 662
||||||
Sbjct: 854 ttgata 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1061
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1051
Effective search space: 687354
Effective search space used: 687354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_f23.g1 MSMg01no144_f23.g1 CHROMAT_FILE:
MSMg01no144_f23.g1 PHD_FILE: MSMg01no144_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:11 2005
(663 letters)
>mm_chr19_17586573_17587635
Length = 1063
Score = 1162 bits (601), Expect = 0.0
Identities = 649/671 (96%), Gaps = 11/671 (1%)
Strand = Plus / Minus
Query: 1 ttctctggggtgtggcttgcaggaagggagcttctctactccaccacaccctccctaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 ttctctggggtgtggcttgcaggaagggagcttctctactccaccacaccctccctaccc 980
Query: 61 tgatgcactgacacctttgaaagtgagagccaggcaagtcctccgtcccctgaagtgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 979 tgatgcactgacacctttgaaagtgagagccaggcaagtcctccgtcccctgaag---tg 923
Query: 121 ttatctgcggtatatctgtcattgcaatgaa--------aaacaaacaaacaaacaaact 172
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 922 ttatctgcggtatatctgtcattgcaatgaaaaacaaacaaacaaacaaacaaacaaact 863
Query: 173 gacttgctatcaaggcatttacagaataataaggtttgtcctcacatactgaacaatgag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gacttgctatcaaggcatttacagaataataaggtttgtcctcacatactgaacaatgag 803
Query: 233 aaactatcagataaggaccaaatgagtagtcaaaaggctgccatagattatttccatagg 292
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 802 aaacgatcagataaggaccacttgagcagtcaaaaggctgccatagattatttccatagg 743
Query: 293 tgatgagcagaggtttactggagagggtaattgtttaccaagcccttatttaacacgccc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 742 tgatgagcagaggtttactggagagggtaattgtttaccaagcccttatttaacatgttc 683
Query: 353 tccgcacaacagatgctcagactaatcagcaaggctagcctctgccttcaggttgctgtg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tccgcacaacagatgctcagactaatcagcaaggctagcctctgccttcaggttgctgtg 623
Query: 413 ctgcagctgaatgcttcacttcaagaaactccacaaaggaaatttcagtagaatgcttaa 472
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 622 ctgcagctgaatgcttcacttcaagaaactccacaaaggaaatttcagtggaatgcttaa 563
Query: 473 gcatcgggaagctcacgtccaacattatactggctttccatttctgtccttccaacaaag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcatcgggaagctcacgtccaacattatactggctttccatttctgtccttccaacaaag 503
Query: 533 cagtagcactatctttacccatacacttgacgtccctgcagcctgaaggccaatgctttg 592
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 cagtagctctatctttacccatacacttgacgtccctgcagcctgaaggtcaatgctttg 443
Query: 593 aatacccatgtgatggcccatctgctgagtgaactctagactcaggttattctacacaac 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatacccatgtggtggcccatctgctgagtgaactctagactcaggttattctacacaac 383
Query: 653 accaatcagct 663
|||||||||||
Sbjct: 382 accaatcagct 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
