Query= MSMg01no146_b05.b1 MSMg01no146_b05.b1 CHROMAT_FILE:
MSMg01no146_b05.b1 PHD_FILE: MSMg01no146_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:25 2005
(712 letters)
>mm_chr19_38479413_38480526
Length = 1114
Score = 1253 bits (648), Expect = 0.0
Identities = 697/718 (97%), Gaps = 10/718 (1%)
Strand = Plus / Minus
Query: 1 gacagcacaactccaagctgctctgagccctgtgggtttagaaaag----ccccggtctc 56
|||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 914 gacaacacaacttcaagctgctctgagctctgtgggtttagaaaagtgaa----ggtctc 859
Query: 57 ttaacagattactatttattttggaggtgttgtatttgttgtgtatgaggaacagataaa 116
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 858 ttaacagattactatttattttggagatgttgtatttgttgtgtatgaggaacagataaa 799
Query: 117 gtttgaaaatttaagatcacagcctacaaaacggctagaggcaagtcttctatagaaaat 176
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 798 gtttgaaaatttaagatcacagcctacaaaacggctagaggcgagtcttctatagaaaat 739
Query: 177 gagttttgaagcgcccggtcgagaagagaaacgagtcgtgagacactttctatagttgta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gagttttgaagcgcccggtcgagaagagaaacgagtcgtgagacactttctatagttgta 679
Query: 237 aaacccaacatctttcttttatgattttattacttacaaaataaaaacacattaggaaaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaacccaacatctttcttttatgattttattacttacaaaataaaaacacattaggaaaa 619
Query: 297 aaatatttccctttgcaagatatagaaactacaatctttggaaaatacataaacccccat 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 618 aaatatttccctttgcaagatatagaaactacaatctttggaaaatacataaacccccgt 559
Query: 357 aattgttacaatacatagccttgaataccaattgaacattgtttaaaaatcataccctgt 416
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 558 aattgttacaatacatagccttgtataccacttgaacattgtttaaaaatcataccctgt 499
Query: 417 aaaggttggtataagaaacattgtctccaatgtcagcaacatatcctgacatccatgtac 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 aaaggttggtataagaaacattgtctccaatgtcagccacatatcctgacatccatgtac 439
Query: 477 ttaagacacagttgaaatataatgtatttccaaaggggttatcttccactatcccagaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaagacacagttgaaatataatgtatttccaaaggggttatcttccactatcccagaca 379
Query: 537 ctcttctattgtgtaagtttggtggtactccaggagtggatctcagtaag--gaggctgc 594
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 378 ctcttctattgtgtaagtttggtggtactccaggagtggaactcagtaagaggaggctgc 319
Query: 595 tatggaaaccagctattgcagccctccctcccgtcatccctcaggatgccctctaagacc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tatggaaaccagctattgcagccctccctcccgtcatccctcaggatgccctctaagacc 259
Query: 655 cctccagagtactaagagtctgttgactctgtgttttctaggatgttggtagaacggc 712
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 258 cctccagagtactaagagtctgctgactctgtgttttctaggatgttggtagaacggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1114
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1104
Effective search space: 775008
Effective search space used: 775008
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_b05.g1 MSMg01no146_b05.g1 CHROMAT_FILE:
MSMg01no146_b05.g1 PHD_FILE: MSMg01no146_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:25 2005
(669 letters)
>mm_chr19_38315200_38316268
Length = 1069
Score = 1164 bits (602), Expect = 0.0
Identities = 653/670 (97%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 1 cagggagatggctcaatgagtaaggatg-cttgctgggctagttttaccccctgagtttg 59
|||||||||||||||||||||||||||| || |||||||||| |||| |||||||||||
Sbjct: 201 cagggagatggctcaatgagtaaggatggct-gctgggctagctttatgccctgagtttg 259
Query: 60 atccctggagcccaggtaaaggtaaaggcagaaggagagagcaggagaaaattgtctcta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atccctggagcccaggtaaaggtaaaggcagaaggagagagcaggagaaaattgtctcta 319
Query: 120 taaaattgtcctctgacagagattaagtatcttgtcccaagtcacagaactatatataat 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 taaaattgtcctctgacagagattaagtatcttgccccaagtcacagaactatatataat 379
Query: 180 agaatcagcttcctaaacaggcctgcttatgctaccaaacattagtggttggttatttcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaatcagcttcctaaacaggcctgcttatgctaccaaacattagtggttggttatttcc 439
Query: 240 tactctacccacatgagggatatataaatctgatataaggaagacgtcagtgttgctggt 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 tactctacccacatgagggatatataaatctgatataaggaagatgtcagtgttgctggt 499
Query: 300 agaaatatttaagaatcactttaacatttttcttaagaccagaaaccctatataaatcat 359
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 500 agaaatatttaagaatcaccttaacatttttcttaagaccagaaactctacataactcat 559
Query: 360 atatgaccttttcctccacaaatagaacatttccttgctttgtaaagaataataaaatgt 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atatgaccttttcctccaaaaatagaacatttccttgctttgtaaagaataataaaatgt 619
Query: 420 ctttgacaattaattccacatacgttaaacatataataaaatatgatgttccaagaagaa 479
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 ctttggcaattaattccacatacgttaaacatttaataaaatatgatgttccaagaagaa 679
Query: 480 gcaattaaaactgtcaatgggctaagcaagctactgaataaacaaagactaaagggattg 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 gcaattaaaactgtcaatgggctaagcaagctactgcataaacaaagactaaagggattg 739
Query: 540 aaatgagtcagtataaaaaccatgaagcctgcaaccatggacattctttccattgagagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaatgagtcagtataaaaaccatgaagcctgcaaccatggacattctttccattgagagg 799
Query: 600 atatctcaaaatgtctgtcagtgtggcaaagggatttatagggaggaggggatgttgata 659
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 800 atatctcaaaatgtctgtcagtgtggtaaagggatttatagggaggagaggatgttgata 859
Query: 660 gggaagaaga 669
||||||||||
Sbjct: 860 gggaagaaga 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
