BAC Information

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BAC

Clone NameMSMg01-146P14
Chromosome19 (Build37)
Map Location 60,042,275 - 60,042,886
singlet/doubletsinglet
Overlap genenone
Upstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
Downstream geneLOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P14.T7 (MSMg01no146_p14.b1)MSMg01-146P14.TJ (MSMg01no146_p14.g1)
ACCAG350370AG350371
length1,2201,228
length of high quality
(start - end)
612 (142 - 753)470 (119 - 588)
definitionCHROMAT_FILE: MSMg01no146_p14.b1 PHD_FILE: MSMg01no146_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:24 2005CHROMAT_FILE: MSMg01no146_p14.g1 PHD_FILE: MSMg01no146_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTCATTTNNNNATCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAGAATAAAAATACCCCATAAAAGTCCCCANCATTTGG
CTTTTTCCCCCTAAGCACCCTTTAAATAGAAGACAGACCTTCAAGTGTGA
TATCTTGCTACAATCCTATTTTTCTCTTCATCTATTACTAATTCCAGGCA
TGAGTCAGGGTGCTTCCCAAAGGCTGGGTGTGCAGTGAGCACACTTTGTC
CAAGGCATTTTTAAAAGGCTGCAGTCATTGAGTGGAAGTTCAAAGTAGCT
TTGTGATTCTGAAATGCACAGATTGCACTAGGCCAAGTGTGAGGATTGCT
GTTGTGGAGACAAACAGATAGTAAAGGCCACGAACTGTTTTAATATTGGT
CTATCCCTCTGAGGAAAGGACTAATCATTCCTTCTGGTATGTTTTGAATT
CTGTCTATGCATGATAAACTTCATAAACCCTGTCTTACTATTATTTTATT
ATGTATTTTATTAGATGTATATGTTCATATAGATATTTGTACCCTTTCAC
AGTAGTGATAGATAACTGTCTAAGCTTTTTTGGTAATTTGAAACTACACT
TCTCATTTTTTTCTTCTGAGTCCATCAGCTTGAATAGTGTCATATCACAC
ATCTTTAAGCCATTTACATTCTAACAACTGTCCATCAGCTTGGTCATTTA
TTCAAAACCTCCTGTTTGTAAGGCACCATCCTAGGTATTCTGGGTGGAGG
ACAAGGTACAGAAATAATAATGTATCATGGAAGGTGAAAAGTGTTCTGTG
GAGTTGTGAAGATGAACTGGGAATTTATTCTGACAGCTATAATCACAGGC
TAAGGCTGGAAAAGGTGACAATAGAGTTGTCAAGTGGCTGGAAAGCCATG
GTTGGCCCTTTCCACCAATAAGGAACTGTGTGGGTGGTTGATTATAAATA
ATCCATTTTTGCTAATACGTAAAATAATCTTGGTTCCCAGCTTGTTCTTT
AGTATAATGGATCTTGCTTTGAACTACTATTTCTTTTTTTGGTCCTACTC
TTGGTTGTATTTCTCAAAATTCTTCTTTTCTCTCCTTTTTTATCCATTCT
CCTCTCTGTAATATGTTTTCCTTCCTTTCTCTTGCTTATCATTATCTATT
CTCCTTCTTTATATTATCTCTCTGTTTCTATCCCTCATCTTCTTTTATCT
CTCTTTCCCTCTTCTTTGTC
TCTTTTCACATGGNAGTCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCCTTATAAAATCTTTCAAAACTTTTATCATGAA
TGGGTGTTCCTTCTTGTCAAATGCTTCCCCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
AGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATATTGTC
TTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATA
GTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCT
GCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAAT
AACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTT
GATCCTGATTCAACTTTGGTACCTGTTATCTGTCCTGAAATTTGTCCATT
TCGTCCAGTTTTTTCTAGTTTTGTTGAGTATATCCTTTTGTACAAGGATC
TGTAGTTGTTTTGTATTCTTTTCATTATTTGTTTTTATTTTTCCTTTTTC
TTTCTTTGATTTTTTTTAACTATAATCTTTGTTTCTGTACTTCTATTCTG
TTTCCTATCTTTATTTCTTTTCTCTTTTCTCTAATTTATTTTTCTTTTAT
TTTTTTTTCTCTTCTTCTTTCTCTTTTTTTTCATCTTTCTCTCTCTCTTA
TCTCTTTTTTCTTTTTTTTTCTCTCTTATTTATCTTTATTTCTTTTTATC
TCATACTTTTTTTTATTTTCACTTTCCTTTTTCTTTCTTTTTTTCTACTT
TTTTTCTTTCTCTTTTTTCTCTTTTTTTCTTTTCCTTATTCCTTTTTCTC
TCTTCTTTCACCTACTCCCCTCTCCTTTTTTTTTTTTCTTTATTCTTACT
TTTTCTTCTATATTTCCTTTCTATTGCTTATTCTATTTTTATACAATTTA
CTTGCTTCCTTTTTATTCTTCTTATTCTTCGTTATCTATCTTTCCTCTTC
TATCTACTATTCTATTCTTTCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p14.b1 MSMg01no146_p14.b1 CHROMAT_FILE:
MSMg01no146_p14.b1 PHD_FILE: MSMg01no146_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:24 2005
         (612 letters)



>mm_chr19_60042075_60043086
          Length = 1012

 Score = 1183 bits (612), Expect = 0.0
 Identities = 612/612 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtgtgatatcttgctacaatcctatttttctcttcatctattactaattccaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 caagtgtgatatcttgctacaatcctatttttctcttcatctattactaattccaggcat 753

                                                                       
Query: 61  gagtcagggtgcttcccaaaggctgggtgtgcagtgagcacactttgtccaaggcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gagtcagggtgcttcccaaaggctgggtgtgcagtgagcacactttgtccaaggcatttt 693

                                                                       
Query: 121 taaaaggctgcagtcattgagtggaagttcaaagtagctttgtgattctgaaatgcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 taaaaggctgcagtcattgagtggaagttcaaagtagctttgtgattctgaaatgcacag 633

                                                                       
Query: 181 attgcactaggccaagtgtgaggattgctgttgtggagacaaacagatagtaaaggccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 attgcactaggccaagtgtgaggattgctgttgtggagacaaacagatagtaaaggccac 573

                                                                       
Query: 241 gaactgttttaatattggtctatccctctgaggaaaggactaatcattccttctggtatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaactgttttaatattggtctatccctctgaggaaaggactaatcattccttctggtatg 513

                                                                       
Query: 301 ttttgaattctgtctatgcatgataaacttcataaaccctgtcttactattattttatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttttgaattctgtctatgcatgataaacttcataaaccctgtcttactattattttatta 453

                                                                       
Query: 361 tgtattttattagatgtatatgttcatatagatatttgtaccctttcacagtagtgatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtattttattagatgtatatgttcatatagatatttgtaccctttcacagtagtgatag 393

                                                                       
Query: 421 ataactgtctaagcttttttggtaatttgaaactacacttctcatttttttcttctgagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ataactgtctaagcttttttggtaatttgaaactacacttctcatttttttcttctgagt 333

                                                                       
Query: 481 ccatcagcttgaatagtgtcatatcacacatctttaagccatttacattctaacaactgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccatcagcttgaatagtgtcatatcacacatctttaagccatttacattctaacaactgt 273

                                                                       
Query: 541 ccatcagcttggtcatttattcaaaacctcctgtttgtaaggcaccatcctaggtattct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccatcagcttggtcatttattcaaaacctcctgtttgtaaggcaccatcctaggtattct 213

                       
Query: 601 gggtggaggaca 612
           ||||||||||||
Sbjct: 212 gggtggaggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)