Query= MSMg01no147_e22.b1 MSMg01no147_e22.b1 CHROMAT_FILE:
MSMg01no147_e22.b1 PHD_FILE: MSMg01no147_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:52 2005
(667 letters)
>mm_chr19_22399283_22400349
Length = 1067
Score = 1021 bits (528), Expect = 0.0
Identities = 630/668 (94%), Gaps = 11/668 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgtgcctcaggaaggcatcctgcacagaccacagtgctgacatctcccacaaa 64
|||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 205 gaattcctgtgcctcaggaaggcatcctgcacagacaacagtgctgagaactcccacaaa 264
Query: 65 tgccacaaaaactactgttcatggaattggaagatcaaagatattgctgcagactctctt 124
|| |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct: 265 tggcacaaaaactactgttcacggaagtggaagatcaaagatattgctgcagactttctt 324
Query: 125 gggaattttcttctcttggtcttagaaataaatttcaagcaaaatgaagcctttgcctat 184
||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 325 aggaattttcttctattggtcttagaaataaatttcaagccaactgaagcctttgtctat 384
Query: 185 acattttgtcttctctgtcctgaaataatctcatggattaaccccataaaatatca-ctc 243
|||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 385 acattttgtcttctctcccctgaaataatctcatggattaaccccagaaaatat-agctg 443
Query: 244 taaaattgtgtccatataatagatgtctcgtgtgggactcagcaatctatgctgtcattt 303
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 444 taaaattgtgtccatataatagatgtctcgtgtgggactcagcattttatgctgtcattt 503
Query: 304 gtgtggcccttgaccatcctgggtctctgtgttagtcatcacccattgcaagagaagcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgtggcccttgaccatcctgggtctctgtgttagtcatcacccattgcaagagaagcct 563
Query: 364 ctca----agccacacatggagatgtcattggaagtcagttcaactgtgacacccactta 419
|||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcaggttag----acatggagatgtcattggaagtcagttcaactgtgacacccactta 619
Query: 420 aaagggtgacattaaatctgatcttctaatattccactctgcttatgtttatagacattt 479
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaagggtgatattaaatctgatcttctaatattccactctgcttatgtttatagacattt 679
Query: 480 cccagggtgtcacatcatttaactcaatactgatgactgtacgtttggatatgctgcatt 539
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 680 cccagggtgtcacatcatttaactcaatattgatgactggacgtttggatatgctgcatt 739
Query: 540 gccataatacttaattacaaatgttccacaaatttttagacttatgcattatgaatgtcc 599
||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 740 gccatgatacttaattacaaatgttccacaaattttaagacttatgcattatgaacatcc 799
Query: 600 aagtgacattacagtgcatacccttccctacttcttattgaccaactttgtatctttttt 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 800 aagtgacattacagtgcatacccttccctacttcttattgaccaactttgtatcattttt 859
Query: 660 tttgaaga 667
|| |||||
Sbjct: 860 tt-gaaga 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_e22.g1 MSMg01no147_e22.g1 CHROMAT_FILE:
MSMg01no147_e22.g1 PHD_FILE: MSMg01no147_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:52 2005
(657 letters)
>mm_chr19_22610945_22612001
Length = 1057
Score = 1104 bits (571), Expect = 0.0
Identities = 594/605 (98%), Gaps = 6/605 (0%)
Strand = Plus / Minus
Query: 53 tacaattcagtttttatttgtaagtggtaaggacttaattgaatggatttaaatatatat 112
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 1057 tacaattcagtttttaattgtaagtggtaaggacttaattgaatggatttaa------at 1004
Query: 113 atatatatatatttgttcagaagaagaagagtcagtttattggtcttcattgtgttcttc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 atatatatatatttgttcagaagaagaagagtcagtttattggtcttcattgtgttcttc 944
Query: 173 gtgtcgtatatgatgatgcatactgccaataaagtatttatgaactaaaaatctagaatt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 gtgtcgtatatgatgatgcatactgccaataaagtatttatgaactaaaaatctagaatt 884
Query: 233 tgcaacaaaacaaaacaaaacaaaacccctttctttgttgtcagatgaaaagcaatatac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 883 tgcaacaaaacaaaacaaaacaaaacccctttctttgttgtcagatgaaaagcgatatac 824
Query: 293 ttggataaattgttgtctttcttcttgaattatttcatttaaccagtcaccatatttcca 352
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 823 ttggataaattgttgtctttcttcttgaattatttcatttaaccagtcatcatatttcca 764
Query: 353 tccatattgatgtatactctacactttaatctagagccaattattgattataagcagagt 412
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tccatattgatgtatactccacactttaatctagagccaattattgattataagcagagt 704
Query: 413 caaacaatgagctcctctttccctctgactcttagcatccatctagtattgataatctcc 472
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 703 caaacaatgagctcctctttccctctgactctttgcatccatctagtattgataatctcc 644
Query: 473 ttatctgaaacagactgtggcctccgatttctcaggcaagaaggaacataataaataaag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttatctgaaacagactgtggcctccgatttctcaggcaagaaggaacataataaataaag 584
Query: 533 agttacaagtcattgggaggactaagtactggcttagtgggtaagagcacttgctgtaca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agttacaagtcattgggaggactaagtactggcttagtgggtaagagcacttgctgtaca 524
Query: 593 aacctggagacttgagatcaaatctccaacccctacacaagaagtcaggcctggatgcac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aacctggagacttgagatcaaatctccaacccctacacaagaagtcaggcctggatgcac 464
Query: 653 atacc 657
|||||
Sbjct: 463 atacc 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
