BAC Information

Click to search

BAC

Clone NameMSMg01-147G20
Chromosome19 (Build37)
Map Location 40,826,196 - 40,826,801
singlet/doubletsinglet
Overlap geneEG668310
Upstream geneCyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720
Downstream geneEG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147G20.T7 (MSMg01no147_g20.b1)MSMg01-147G20.TJ (MSMg01no147_g20.g1)
ACCAG350700AG350701
length732721
length of high quality
(start - end)
345 (71 - 415)603 (66 - 668)
definitionCHROMAT_FILE: MSMg01no147_g20.b1 PHD_FILE: MSMg01no147_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:01 2005CHROMAT_FILE: MSMg01no147_g20.g1 PHD_FILE: MSMg01no147_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTXXXXXXXXXXXXXXXXXXXXXXXCTATTCGGACACGATCCGCGGAA
TTCCTACAACTTAGAAGCAATAAAACAATCTAATTTTAAAGTGGGAAAAT
AACTTGGACATTTTCACTAAGAAAACAGACAAACTAGCTCAGGAGATGGC
TGAGAGGACAAGAGAGCTTTCTAGGAAAGCAAGAGGACCCAAACCAGATC
CCAGAACCTGTATAAACGGCTGAGTACAGATGCCCATGTCTCTAACTCCA
GCATCAGGGGAAGGAAGGGCAGGCGGACTCACAGGGCTTGCTGGTCAGCC
AACCCAGCCAAAGAGAGTTCAGTGAGAGCTCCTTTCCCACAGCAATGCAA
TGGATGGAGGAAGACACCCAGAGTATTGCCTATGTACACATACCACTCAC
ACATGACTTCAGCGCCACACATACAGAGAAAAAAACCATAAAGAAGCCAA
CACGTCCAGAAAGAGATGCTCAACAGCTTTAATCATTTCAGAAAATACAA
AACCAAAACCACAAGCTAACGCCTCATACCCATTTAGAGTGCTATTATCA
AAAGCAACCCCATCCCCAGAAAGCCCTCAAAAAAGGGGAAATAGCAAGCA
CTGACCAGGCCATGCAGAAACTAGAATCCCTGCCCAATCCTACTGTAAAG
TAAAATGAGGTAACTGCTGGAGGCAACAGTCCGGTAGTTTTCAAAACACT
TGCCCCAGGATGCCACATTTCCACTTTTAATC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGGGTGTGAAGCATCATGGTGGGCTTGGGGTTCAT
TTTAGAAGATGTTGGAGATCAAGAAGTATAGTTAAATTAGGAACTGATTT
TTGTCATCTTGTTCCTGCTGTGTTTTATCTTGGCACATAAGCAGGGAGAA
TCTTAAATGTCCTTAAACCAATCATTAAAATGTCCCATCTACTAATTAAG
AAAAAAAAATCTAGCTAACTTGGACTTGACTCTTTTCTATTCCAAATCTA
CTCAGTAGTTTTACACTCTGTCCAGTCCTCTTGTCTCATATATGTCTGCT
GCCAATGTTTCATTCACAGGTCCATTTCTTTTTGTTTTGTTTTGGTTTTT
TTGCCTTGTTTTTTCGAGACAGGCTTCTCTGTATAGCCCTGGGTGTCCTG
GAACTCACTTTGTAGACCACCCTGGCCTCGAACTCAGAAATCTGCCTGCC
TCTGCCTCCCAAGTGCTTGGGATTAAAGGTGTGCGCCACCATGCCTGACT
TCACAGGTCCATTTCTAAGTGCAGTTCTCCAGTATTGCTTTCTTGTTTAA
ACCACAGCTGCCATTTATCATTTTATAAAAAAAGTTAATTTTTTTTTACA
TATATGAGTGTTTTGCCTTCTTTAAATACGTGCACCTCTGGCATGCAGTG
CCTGTGGAGGCCAGCATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_g20.g1 MSMg01no147_g20.g1 CHROMAT_FILE:
MSMg01no147_g20.g1 PHD_FILE: MSMg01no147_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:01 2005
         (603 letters)



>mm_chr19_40825996_40826996
          Length = 1001

 Score =  978 bits (506), Expect = 0.0
 Identities = 583/610 (95%), Gaps = 11/610 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtgtgaagcatcatggtgggcttggggttcattttagaagatgttggagatcaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggtgtgaagcatcatggtgggcttggggttcattttagaagatgttggagatcaagaa 260

                                                                       
Query: 61  gtatagttaaattaggaactgatttttgtcatcttgttcctgctgtgttttatcttggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatagttaaattaggaactgatttttgtcatcttgttcctgctgtgttttatcttggca 320

                                                                       
Query: 121 cataagcagggagaatcttaaatgtccttaaaccaatcattaaaatgtcccatctactaa 180
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cataagcagggagaatcttaagtgtccttaagccaatcattaaaatgtcccatctactaa 380

                                                                       
Query: 181 ttaagaaaaaaaaatctagctaacttggacttgactcttttctattccaaatctactcag 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagaaaaaaaa-tctagctaacttggacttgactcttttctattccaaatctactcag 439

                                                                       
Query: 241 tagttttacactctgtccagtcctcttgtctcatatatgtctgctgccaatgtttcattc 300
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 tagttttacaccctgtccagtcctcttgtctcatatatgtctgctgccaatgcttcattc 499

                                                                       
Query: 301 acaggtccatttctttttgttttgttttggttttt-ttgccttgttttttcgagacaggc 359
           |||||||||||||||||||||| |||||| ||||| |||  |||||||||||||||||| 
Sbjct: 500 acaggtccatttctttttgtttcgttttg-tttttcttgttttgttttttcgagacaggg 558

                                                                       
Query: 360 tt-ctctgtatagccctgggtgtcctggaactcactttgtagaccaccctggcctcgaac 418
           || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 tttctctctatagccctgggtgtcctggaactcactttgtagaccagcctggcctcgaac 618

                                                                       
Query: 419 tcagaaatctgcctgcctctgcctcccaagtgcttgggattaaag--gtgtgcgccacca 476
           ||||||||| |||||||||||||||||||||||||||||||||||  ||| | |||||||
Sbjct: 619 tcagaaatccgcctgcctctgcctcccaagtgcttgggattaaagacgtg-g-gccacca 676

                                                                       
Query: 477 tgcctgacttcacaggtccatttctaagtgcagttctccagtattgctttcttgtttaaa 536
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgcctggcttcacaggtccatttctaagtgcagttctccagtattgctttcttgtttaaa 736

                                                                       
Query: 537 ccacagctgccatttatcattttataaaaaaa-gttaatt--tttttttacatatatgag 593
           ||||||||||  |||||||||||||| ||||| |||||||  ||||||||||||||| ||
Sbjct: 737 ccacagctgctgtttatcattttatataaaaacgttaattattttttttacatatataag 796

                     
Query: 594 tgttttgcct 603
           ||||||||||
Sbjct: 797 tgttttgcct 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1001
Length adjustment: 10
Effective length of query: 593
Effective length of database: 991
Effective search space:   587663
Effective search space used:   587663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)