BAC Information

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BAC

Clone NameMSMg01-147I09
Chromosome19 (Build37)
Map Location 26,461,068 - 26,652,326
singlet/doubletdoublet
Overlap gene1700048O14Rik, LOC100041846, LOC100041857
Upstream geneAnkrd15, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147I09.T7 (MSMg01no147_i09.b1)MSMg01-147I09.TJ (MSMg01no147_i09.g1)
ACCAG350774AG350775
length715697
length of high quality
(start - end)
376 (83 - 458)427 (70 - 496)
definitionCHROMAT_FILE: MSMg01no147_i09.b1 PHD_FILE: MSMg01no147_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:08 2005CHROMAT_FILE: MSMg01no147_i09.g1 PHD_FILE: MSMg01no147_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,461,068 - 26,461,443)(26,651,910 - 26,652,326)
sequence
GGGGNAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXCTATTCGAACAG
GATCCGCGGAATTCCTTAGATTCCTGGCAAATAGATGAAGATGATTCATT
TAAGCTTTTAAATGATGCACAGGACTGTGTGCCACTCCTACAGGACAATA
GCACTCCTTCAAAGCAGATACCTCCATGTCCAATACTACCCTCTCCATGA
AGACCCAAATCCGTGGTCCATGAGAAAGCACATTGAAATTACCCAATGCC
TAGGTCTTCATCATTCTCTCCTTATTCTGGGTTGAGGGGATGAGAGAGAT
TTGGTGAAGAACCTCAGGAAATCTTTCCTCATAGGGATAATAATAAAGGA
ATACACCAAGAGACACATCTGGCCTTCCTTCCGTTTGACAGTTACATACC
AGTTAGGCACCGGTCATCTCCCTGCAGCCTCCTCGGAGGTGAGCATTGGG
CACAGTTAGCCTGGCCACCACAGAGAAGGAGGCAAAGGCAGCCTTCTGAG
TTTCTTAATGAAAAATCACCTCCCTCCTCTTCAGGTCTCCAGGTCCCCAT
CTATAACATGAATGAGTCAGGCCAGATACTCTTCCCAGTTCTTTTCCGAC
ACTGATCCCTAAGTCAGAGAACAAATGAGCTTCTCTCTACTCATGCGTCC
GGATATGAGTGATAGCACGAATGGGAAGCAGGCATCCCCAACACTCTGAA
GAGTCTCCTCCCAAA
GAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTACTCAAAGGTCACCTCACTCTATCAACC
CTTCCAAGATTCTCTTGCCATATTCAGACCTTGCCTTCACTTCCATAATC
GAGCCTGATTATTAGTGATTTTAGATTTGTCATTCCATCAGACATAAGGG
TATTGCGTGATCACATGTCTTGTACATTCAGACACAATTGCATGGAGCAG
GGATCTTCTGCCGTATCTCAACAAATGGATTTACATCTGGACATAGAAGG
TGCTCAGTAAGTGGTTCTTAAGGGAATAAAGAAACAGTGAAGGTTTATAG
CAGATAAACGCTTGGCAGCACTTCCTTAGATAGAAAAGGCTGTGGCTAAC
ACCTGGGAGGCTGGGGCAGGATTGCTGTGGAACTGAGCATAGGCTGGGCT
AGGCAGTGAGAGGTTTGCCTCAAAATGAATAAAACAAACAATGCTCCTCA
CCCTCGAAACTGGAGAGGGACTACCAGAAAGAAGACCTGTGTGCCTCACA
CCTGCGGAGGCCATTCCTGGATCTCGGTAGGCCGCCTCTAATTTCCCAGC
TAGCACCTTCTCGCTCACGTAGATCCCTTTCTTACTAAAAATGGCACGTA
ATATTCCCTATTGCCTAGGGTCTATTGAGATGCGTCACCATGATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_i09.b1 MSMg01no147_i09.b1 CHROMAT_FILE:
MSMg01no147_i09.b1 PHD_FILE: MSMg01no147_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:08 2005
         (376 letters)



>mm_chr19_26460868_26461643
          Length = 776

 Score =  658 bits (340), Expect = 0.0
 Identities = 367/376 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgaagatgattcatttaagcttttaaatgatgcacaggactgtgtgccactcctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agatgaagatgattcatttaagcttttaaatgatgcacaggactgtgcgccactcctaca 260

                                                                       
Query: 61  ggacaatagcactccttcaaagcagatacctccatgtccaatactaccctctccatgaag 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacaataccactccttcaaagcagatacctccatgtccaatactaccctctccatgaag 320

                                                                       
Query: 121 acccaaatccgtggtccatgagaaagcacattgaaattacccaatgcctaggtcttcatc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acccaaatccgtggtccatgagaaagcacattgaaattacgcaatgcctaggtcttcatc 380

                                                                       
Query: 181 attctctccttattctgggttgaggggatgagagagatttggtgaagaacctcaggaaat 240
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctttctttattctgggttgaggggatgagagagatttggtgaagaacctcaggaaat 440

                                                                       
Query: 241 ctttcctcatagggataataataaaggaatacaccaagagacacatctggccttccttcc 300
           ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcctcaaagggataataatgaaggaatacaccaagagacacatctggccttccttcc 500

                                                                       
Query: 301 gtttgacagttacataccagttaggcaccggtcatctccctgcagcctcctcggaggtga 360
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgacagttacataccagttagacaccggtcatctccctgcagcctcctcggaggtga 560

                           
Query: 361 gcattgggcacagtta 376
           ||||||||||||||||
Sbjct: 561 gcattgggcacagtta 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no147_i09.g1 MSMg01no147_i09.g1 CHROMAT_FILE:
MSMg01no147_i09.g1 PHD_FILE: MSMg01no147_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:08 2005
         (427 letters)



>mm_chr19_26651910_26652736
          Length = 827

 Score =  791 bits (409), Expect = 0.0
 Identities = 415/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactcaaaggtcacctcactctatcaacccttccaagattctcttgccatattcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttactcaaaggtcacctcactctatcaacccttccaagattctcttgccatattcagac 358

                                                                       
Query: 61  cttgccttcacttccataatcgagcctgattattagtgattttagatttgtcattccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 357 cttgccttcacttccataatcgagcctgattattagtgattttagatttgtcactccatc 298

                                                                       
Query: 121 agacataagggtattgcgtgatcacatgtcttgtacattcagacacaattgcatggagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agacataagggtattgcgtgatcacatgtcttgtacattcagacacaattgcatggagca 238

                                                                       
Query: 181 gggatcttctgccgtatctcaacaaatggatttacatctggacatagaaggtgctcagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gggatcttctgccgtatctcaacaaatggatttacatctggacatagaaggtgctcagta 178

                                                                       
Query: 241 agtggttcttaagggaataaagaaacagtgaaggtttatagcagataaacgcttggcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agtggttcttaagggaataaagaaacagtgaaggtttatagcagataaacgcttggcagc 118

                                                                       
Query: 301 acttccttagatagaaaaggctgtggctaacacctgggaggctggggcaggattgctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 acttccttagatagaaaaggctgtggctaacacctgggaggctggggcaggattgctgtg 58

                                                                    
Query: 361 gaactgagcataggctgggctaggcagtgagaggtttgcctcaaaatgaataaaaca 417
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gaactgagcatagcctgggctaggcagtgagaggtttgcctcaaaatgaataaaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)