Query= MSMg01no148_a19.b1 MSMg01no148_a19.b1 CHROMAT_FILE:
MSMg01no148_a19.b1 PHD_FILE: MSMg01no148_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:49 2005
(681 letters)
>mm_chr19_60454433_60455513
Length = 1081
Score = 1004 bits (519), Expect = 0.0
Identities = 519/519 (100%)
Strand = Plus / Minus
Query: 163 gtaacaggcattcttattcactgagccactgctccacccctatcactgacatttaagagc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gtaacaggcattcttattcactgagccactgctccacccctatcactgacatttaagagc 1022
Query: 223 cattgcctatttagaattacaataactagcatagactgcaaaagaccaaagagatgacca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cattgcctatttagaattacaataactagcatagactgcaaaagaccaaagagatgacca 962
Query: 283 cataacttaccatcccaaacaggacactttacagagtatggagtaatactaatggttaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cataacttaccatcccaaacaggacactttacagagtatggagtaatactaatggttaca 902
Query: 343 ctgagacaggggacatgaactcagatgacactggaacgtaagctctgtgttatctgggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctgagacaggggacatgaactcagatgacactggaacgtaagctctgtgttatctgggtt 842
Query: 403 tgacaaaggtcaccagcttggtccttcctttctgggatgggaaaaaaatttatctacctg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgacaaaggtcaccagcttggtccttcctttctgggatgggaaaaaaatttatctacctg 782
Query: 463 atctaaaccagcaagtacaggttaacattgttcaaagctttttaagtaaatagatgaaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atctaaaccagcaagtacaggttaacattgttcaaagctttttaagtaaatagatgaaaa 722
Query: 523 cagagttcagaggtcacccctgcctagctgtgtacacccctgggggagaggacagctttg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cagagttcagaggtcacccctgcctagctgtgtacacccctgggggagaggacagctttg 662
Query: 583 gaaattctatggtttgtggaagaggaaacaggagagacagggtggggacaggagaacatc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaaattctatggtttgtggaagaggaaacaggagagacagggtggggacaggagaacatc 602
Query: 643 aagagaaaacaagctggggagcttgtaggacatcttatg 681
|||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagagaaaacaagctggggagcttgtaggacatcttatg 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_a19.g1 MSMg01no148_a19.g1 CHROMAT_FILE:
MSMg01no148_a19.g1 PHD_FILE: MSMg01no148_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:49 2005
(579 letters)
>mm_chr19_60297045_60298023
Length = 979
Score = 1077 bits (557), Expect = 0.0
Identities = 576/587 (98%), Gaps = 8/587 (1%)
Strand = Plus / Plus
Query: 1 aactcaaagagtagccatggaaactattttaaaaccactaacagataccacaggagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aactcaaagagtagccatggaaactattttaaaaccactaacagataccacaggagacca 252
Query: 61 atatgtctgccaatgacctaaggacagccaatttaaactttaaaatctaaaatggataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atatgtctgccaatgacctaaggacagccaatttaaactttaaaatctaaaatggataaa 312
Query: 121 acagaaccctgattttcttaagtatggactcttctgcctaaacgacgctcagtaaagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acagaaccctgattttcttaagtatggactcttctgcctaaacgacgctcagtaaagcac 372
Query: 181 tcatgactcaaga--------aggaacttaaaacaatgtatttttaaatttttattttgt 232
||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 373 tcatggctcaagaatgtcagtaggaacttaaaacaatgtagttttaaatttttattttgt 432
Query: 233 tttgttcttttactaagacagggccttactctagagcccaggcaggccaagaattcccga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttgttcttttactaagacagggccttactctagagcccaggcaggccaagaattcccga 492
Query: 293 agaccctcctgcttcagcctcctaaatgctgcaattatacacgtgaaacatcacaactaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agaccctcctgcttcagcctcctaaatgctgcaattatacacgtgaaacatcacaactaa 552
Query: 353 tttaaggctcaaaataccatgtttctcactgtgcccataaaagaaaataaaggtggatgt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttaaggctcaaaataccatgtttctcactgtgcccataaaagaaaataaaggtggatgt 612
Query: 413 gtcatctacactgaagcatatataactttcaaaaggcatgttgtctaagaagcaggaaaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtcatctacactgaagcatatataactttcaaaaggcatgttgtctaagaagcaggaaaa 672
Query: 473 caaagaacaaaaactaagttgtacatctgtattttaaaaggtgtagcagtatgtgccaac 532
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caaagaaaaaaaactaagttgtacatctgtattttaaaaggtgtagcagtatgtgccaac 732
Query: 533 aagatggctcagcaagtaaaggcacttgtcatcagccctgacgacct 579
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aagatggctcagcaagtaaaggcacttgtcatcagccctgacgacct 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
