Query= MSMg01no148_n15.b1 MSMg01no148_n15.b1 CHROMAT_FILE:
MSMg01no148_n15.b1 PHD_FILE: MSMg01no148_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:53 2005
(615 letters)
>mm_chr19_45880794_45881813
Length = 1020
Score = 1118 bits (578), Expect = 0.0
Identities = 606/618 (98%), Gaps = 5/618 (0%)
Strand = Plus / Plus
Query: 3 ggaattcactctatagacccggctagcctgaaactcagagatcctcctgcctgtgcctgc 62
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 203 ggaattcactctatagaccaggctagcctgaaactcagagatcttcctgcctgtgcctgc 262
Query: 63 taagggctgggattaaaggcgtgtgagtcaccaccacctggtaccttgatgagttcttag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taagggctgggattaaaggcgtgtgagtcaccaccacctggtaccttgatgagttcttag 322
Query: 123 catgtacgtattggagcttctccccttacaaagcttttgatgaactagaacgtgaacact 182
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catgtatgtattggagcttctccccttacaaagcttttgatgaactagaacgtgaacact 382
Query: 183 ggacaacttcgtaagtgctgaataagcatggattgccactgtgagcaacagggcgacaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggacaacttcgtaagtgctgaataagcatggattgccactgtgagcaacagggcgacaga 442
Query: 243 gcgacagagcactcgtcccagggctccacagcatgcagcagctcacaaatggttcagagt 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 gcgacagagcactcgtcccagggctccacagcacgcagcagctcacaaatggttcagagt 502
Query: 303 tgttactgtcactatttcttttttttactgtccccccccc-----agacaggttcccccc 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 tgttactgtcactatttcttttttttactgtccccccccccccccagacaggttcccccc 562
Query: 358 ttttagattttacgcacacacatatttttcttttctttttcttttttacgtatttttcct 417
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttagattttacgtatatacatatttttcttttctttttcttttttacgtatttttcct 622
Query: 418 aaatgtgtatctgtgtaccacatgcatacatggtgcctgtggaggtctgcagaaggggtc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaatgtgtatctgtgtaccacatgcatacatggtgcctgtggaggtctgcagaaggggtc 682
Query: 478 agagcctcctggaactggagttacaggtgattgtgagccatcatggtgctgggaaccaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agagcctcctggaactggagttacaggtgattgtgagccatcatggtgctgggaaccaaa 742
Query: 538 tccaggtcctctgcaagaaacaactgctctcaactgctgagccatctctctaacccctgc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tccaggtcctctgcaagaaacaactgctctcaactgctgagccatctctctaacccctgc 802
Query: 598 tcaggatcttcacatagc 615
||||||||||||||||||
Sbjct: 803 tcaggatcttcacatagc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1020
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1010
Effective search space: 611050
Effective search space used: 611050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_n15.g1 MSMg01no148_n15.g1 CHROMAT_FILE:
MSMg01no148_n15.g1 PHD_FILE: MSMg01no148_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:53 2005
(315 letters)
>mm_chr19_45995052_45995766
Length = 715
Score = 601 bits (311), Expect = e-176
Identities = 314/315 (99%)
Strand = Plus / Minus
Query: 1 ctagccctggagggagaggcaagtggatctctgtgagttctaggccagcctgggatacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctagccctggagggagaggcaagtggatctctgtgagttctaggccagcctgggatacag 572
Query: 61 agtgaattctaggccagccagtgccatgtagtgataccttgtcttaaaaaacaaaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agtgaattctaggccagccagtgccatgtagtgataccttgtcttaaaaaacaaaatcaa 512
Query: 121 ccaaacatgtcttgagtctcaaatattctggctttgtgtaacagcaaggaggaaatcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccaaacatgtcttgagtctcaaatattctggctttgtgtaacagcaaggaggaaatcagt 452
Query: 181 gcaaacttggactctcacccccttccatttggtagcagcatatggactatagggagcctc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcaaacttggactctcactcccttccatttggtagcagcatatggactatagggagcctc 392
Query: 241 tgtgtttcctcaagatgagtaatctcagaaggaatggcattaggcgggtggggatggatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgtgtttcctcaagatgagtaatctcagaaggaatggcattaggcgggtggggatggatg 332
Query: 301 ggggcggagagatgg 315
|||||||||||||||
Sbjct: 331 ggggcggagagatgg 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
