Query= MSMg01no149_l21.b1 MSMg01no149_l21.b1 CHROMAT_FILE:
MSMg01no149_l21.b1 PHD_FILE: MSMg01no149_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:07 2005
(586 letters)
>mm_chr19_47173401_47174386
Length = 986
Score = 1048 bits (542), Expect = 0.0
Identities = 571/584 (97%), Gaps = 9/584 (1%)
Strand = Plus / Plus
Query: 4 gaattccaggacagttgc----gctacacagagaaaccctgtctctaaaaaaaaacaaac 59
|||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattccaggacag---ccagggctacacagagaaaccctgtctctaaaaaaaa-caaac 260
Query: 60 aaagcaatttattttacttgcagttacgtgtttggggtgtgagtatacatacgtgtgttc 119
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 261 aaagcaatttattttacttgcagttacatgtttggg-tgtgagtatacatacgtgtgttc 319
Query: 120 caacagtgcttgtagagaccagagccactgggttttcctagagctcaagttacaggtggt 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagcagtgcttgtagagaccagagccactgggttttcctagagctcaagttacaggtggt 379
Query: 180 tgagagccgcctgatgtgggttctggaaactaccgtctggtccttggaagactggtgcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgagagccgcctgatgtgggttctggaaactaccgtctggtccttggaagactggtgcac 439
Query: 240 actattgacctatgtaatcacctgtaaaatgtaatttttaacaacatagtaatatgccta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actattgacctatgtaatcacctgtaaaatgtaatttttaacaacatagtaatatgccta 499
Query: 300 ctaataaagctactatcatagaggtacccagtagatctttctggtcattcagcacttgga 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 ctaataaagctactatcatagaggtacccagtagatctttctggtcattgagcacttgga 559
Query: 360 atgtagccatgttgacatgacagtactttggacaaagttattttatttgtttgtttgttt 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtagccatgttgatatgacagtactttggacaaagttattttatttgtttgtttgttt 619
Query: 420 gttttagatcacatagttctggcaggccgggaacttactatttagacaccaggctggcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttttagatcacatagttctggcaggccgggaacttactatttagacaccaggctggcct 679
Query: 480 ccatctcagatctttctgcctttctcttccaagtgctgagataaaaaagagtatgccact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccatctcagatctttctgcctttctcttccaagtgctgagataaaaaagagtatgccact 739
Query: 540 atgccctacataaactgctattatatcaaatttctcttttttta 583
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgccctacataaactgctattatatcaaatttctcttttttta 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_l21.g1 MSMg01no149_l21.g1 CHROMAT_FILE:
MSMg01no149_l21.g1 PHD_FILE: MSMg01no149_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:07 2005
(542 letters)
>mm_chr19_47343833_47344774
Length = 942
Score = 1013 bits (524), Expect = 0.0
Identities = 539/546 (98%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 1 cagtcctgcatttctgacgggatcagctttcgaggcggacagaaggcagaggtgagcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagtcctgcatttctgacgggatcagctttcgaggcggacagaaggcagaggtgagcctc 487
Query: 61 cttcagaccaaggacctgtgtttcatattttataatatgtcttcttggcaaggcttctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttcagaccaaggacctgtgtttcatattttataatatgtcttcttggcaaggcttctgg 427
Query: 121 gggtcaatcagggcaggtaacagaaatgagctgcccggccatgagtacttgcctagtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gggtcaatcagggcaggtaacagaaatgagctgcccggccatgagtacttgcctagtcag 367
Query: 181 ggccacaccagggctaaagcccacaacttgggtttctgtccctcactcacttgcttgtcc 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 366 ggccacaccagggctaaagcccacaacttgagtttctgtccctcactcacttgcttgtcc 307
Query: 241 cacaatgacatctcctgagcacagagagcctcgaagtgaagtgctgatgagggacagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cacaatgacatctcctgagcacagagagcctcgaagtgaagtgctgatgagggacagaaa 247
Query: 301 gatgacagagcagtttgcttcatcagaaatgttttattttggagggcataacacacacgc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 gatgacagagcagtttgcttcatcagaaatgttttattttggaggggataacacacacgc 187
Query: 361 acacacatgagtacatgcacgcacatgcacacacatgcatgcaacacaacacatgcaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acacacatgagtacatgcacgcacatgcacacacatgcatgcaacacaacacatgcaacc 127
Query: 421 atacatgcttgtacacacacacacacacacacacacacacac----acacatgcacgtgg 476
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 126 atacatgcttgtacacacacacacacacacacacacacacacatatacatatgcacgtgg 67
Query: 477 agatcagccttgtctactaacccaagaaatctcttgcctaatgaggtttttgtggccact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 agatcagccttgtctactaacccaagaaatctcttgcctaatgaggtttttgtggccact 7
Query: 537 tggagg 542
||||||
Sbjct: 6 tggagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
