BAC Information

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BAC

Clone NameMSMg01-151O14
Chromosome19 (Build37)
Map Location 26,944,792 - 26,945,036
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O14.T7 (MSMg01no151_o14.b1)MSMg01-151O14.TJ (MSMg01no151_o14.g1)
ACCAG353945AG353946
length758784
length of high quality
(start - end)
120 (77 - 196)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no151_o14.b1 PHD_FILE: MSMg01no151_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:51 2005CHROMAT_FILE: MSMg01no151_o14.g1 PHD_FILE: MSMg01no151_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACACGCACCCGCGGA
ATTCCAGACAATTAGCTCCCAAATTAGACTTGGAGTACTCAGAGAAGGCT
TCATGGAGAAGGCAGCATCTGAGTTGCTTTTTTAATACATAAAATTCCAG
ACAGTGAAAACAGCTGGGATGTTTCATCCAGAGGAGAGAAAAACAAGGCT
CAACTAAACTGTTTGGGGCACAGCTGATTTTAGGTCTTGTAGGTAATGAG
TCTGAGCTAACAGAAACAGAAGTTAAAGTTTCTAGAGGTCCGAGAGAGCA
CACCAAAGAGCTGGGTATTATATTGTTTAGCTATATATAAAGTCTTCCCT
AAATACCAGCTCCTCTTTAATTACAACCCCACAGAATCATCAGCTCCTTC
CATTATATTCCACCCACCACACCCCGACAGCTCTTATCACAGACAGTGAT
AATGACCTAGCCTGTGCTGGCTTTCTCTGCCATCCCTGGAAAGGTGAACA
CCCAGTGCTGTTCATCACCTGCACCCGTTCCTACTGAGGTACCATCACTA
TGCTCTTGCCCCCCCACCCCGACAGCGATCATGCACCGTTTATCTCCCCC
CCCATTCTTCCTAATTTCTTCCCCCCCTCTCCTTTTTATCTGCCCCCCCC
CCCCCCCCCCCCCCCCTCTCCCCTCCCTCTCCCCACCCCCCCCCCCCCCT
CCCCTCCCCCTTTCTTCCCCCCCCCCCCCCCTCCCCTTCCGCCCCTCCCC
CCTCCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTTCCCCTGGTTCCCTCATTC
TTTGTCTCTAAGGAAACAGAGAAAGTTGGATAACCAGGGCCACATAGGAT
CCCCCTCCCAGGGCCGTGACTGGACAGGGGTTTGGAGTGGGTTTCCTCCT
GGATGTCTGTCAGCAGCTCAGTTAGCCCTGCTGGAAGAGAGCACAGCGGG
GTCACTCTTTGTGCATTAACCCCGGCAGCTTGCTCTCTCCATCTCTCGTC
AGCTGTTCCTTTACCATGGAAAGCACACACAGCTCAGATAATTAAACACT
TGCGGCCCATTGTACATTTTCATGATATCCATCCGTAGGCAATTATTTCG
GAATGTGCTCATGAAATGTGCCACCACTCTCTTCGCCATACTTTACAAGA
TGCACCGCCATGAGTTTGCCCCGATGTTCCCGCCACAATCCTCCGCCCTC
TCCCCTGTTCGCCCTCTCCTTCCCCTCCCTTCTTGCCTTTCCCCCCCTTT
GCTTTCCCTTCCCCCCCCGCCTCGTTCCCCTCCTCCTTCCCCCCCTCTTT
TCCTCTCTATACCTCCTCCCTCCCCTCTCCTCTTTTTCCCCTCCCCTTTT
CTTTCCCCTTCTCTCCCTTTCTCCCCCCCTCCCCCTCTCTTCTCTCTCCC
ACCACTCTTCCTCTTTCCACCTCCCCCTCCCACCCTCACCTTCTCTCTCC
CCCCCCTATACTCTCCTCTCCTTTACCCCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o14.g1 MSMg01no151_o14.g1 CHROMAT_FILE:
MSMg01no151_o14.g1 PHD_FILE: MSMg01no151_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:51 2005
         (245 letters)



>mm_chr19_26944592_26945236
          Length = 645

 Score =  412 bits (213), Expect = e-119
 Identities = 237/245 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtttcccctggttccctcattctttgtctctaaggaaacagagaaagttggataacca 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtttccccttgttccctcattctttgtctctaaggaaacagagaaagttggataacca 260

                                                                       
Query: 61  gggccacataggatccccctcccagggccgtgactggacaggggtttggagtgggtttcc 120
           ||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 261 gggccacataggacccccctccgagggctgtgactggacagggctttggagtgggtttcc 320

                                                                       
Query: 121 tcctggatgtctgtcagcagctcagttagccctgctggaagagagcacagcggggtcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctggatgtctgtcagcagctcagttagccctgctggaagagagcacagcggggtcact 380

                                                                       
Query: 181 ctttgtgcattaaccccggcagcttgctctctccatctctcgtcagctgttcctttacca 240
           || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 381 ctctgtgcattaaccccggcagctcgctctctccatctctcgtcagctgctcctttacca 440

                
Query: 241 tggaa 245
           |||||
Sbjct: 441 tggaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)