Query= MSMg01no152_l08.b1 MSMg01no152_l08.b1 CHROMAT_FILE:
MSMg01no152_l08.b1 PHD_FILE: MSMg01no152_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
(246 letters)
>mm_chr19_31960582_31961231
Length = 650
Score = 414 bits (214), Expect = e-120
Identities = 237/246 (96%), Gaps = 4/246 (1%)
Strand = Plus / Plus
Query: 1 aaggcctgcagccatccagttgattcttctctcctgtcacctctcactcttcgtgtccag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcctgcagccgtccagttgattcttctctcctgtcacctctcactcttcgtgtccag 260
Query: 61 tctatagaactttgattagtaattctatttttgtctctggtccctattggtcaactgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctatagaactttgattagtaattctatttttgtctctggtccctattggtcaactgtga 320
Query: 121 tcatttcctagtttcttctcttgagta-tt---tgcagtggtttctgctttcagtaaatt 176
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 321 tcatttcctagtttcttctcttgagtagttatgtgcagtggtttctgttttcagtaaatt 380
Query: 177 tttttcacattaggatttttgacccaattttataatgaaaattctacttcgccaagtatt 236
||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tttttcagattagggtttttgacccaattttataatgaaaattctacttcaccaagtatt 440
Query: 237 cacatt 242
||||||
Sbjct: 441 cacatt 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 650
Length adjustment: 9
Effective length of query: 237
Effective length of database: 641
Effective search space: 151917
Effective search space used: 151917
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no152_l08.g1 MSMg01no152_l08.g1 CHROMAT_FILE:
MSMg01no152_l08.g1 PHD_FILE: MSMg01no152_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
(354 letters)
>mm_chr19_32133701_32134455
Length = 755
Score = 671 bits (347), Expect = 0.0
Identities = 353/355 (99%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 1 cttgagaaccaggcatacatgtgttacatgtacaaacatgagagcaaaagactttctcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttgagaaccaggcatacatgtgttacatgtacaaacatgagagcaaaagactttctcat 496
Query: 61 gtaaaataaataaatcaagcccccaaattttaaatgaaaaaatactcc-aaaaaatccca 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 gtaaaataaataaatcaagcccccaaattttaaatgaaaaaatactccaaaaaaatccca 436
Query: 120 cttgggtttataataatcatctaatattgaaccctggagaggtgtccagttttgctgttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttgggtttataataatcatctaatattgaaccctggagaggtgtccagttttgctgttt 376
Query: 180 tgaaatgtaatgataaagactgtcatttgagcacttaattacatctcaggggaccaaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgaaatgtaatgataaagactgtcatttgagcacttaattacatctcaggggaccaaaga 316
Query: 240 agtaatacagatagcatagcatagcattttattgaattctgtaacattgatactaaaatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agtaatacagatagcatagcatagcattttattgaattctgtaacattgatactaaaatg 256
Query: 300 atcactgcatacctaaggctgaatacctaaaaatttcctatgagttccctgtaag 354
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 255 atcactgcatacctaaggctgaatacctaaaaatttccaatgagttccctgtaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 755
Length adjustment: 9
Effective length of query: 345
Effective length of database: 746
Effective search space: 257370
Effective search space used: 257370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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