Query= MSMg01no153_e06.b1 MSMg01no153_e06.b1 CHROMAT_FILE:
MSMg01no153_e06.b1 PHD_FILE: MSMg01no153_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:36 2005
(556 letters)
>mm_chr19_24735187_24736145
Length = 959
Score = 998 bits (516), Expect = 0.0
Identities = 545/558 (97%), Gaps = 9/558 (1%)
Strand = Plus / Minus
Query: 5 gaattcttttaa---ttcctcttcttaggttcggttctgcagttctttaaccaaattggt 61
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaattcttttaagggt---tcttcttaggttcggttctgcagttctttaaccaaattggt 719
Query: 62 tatttcttg--aaaaaaaagagtctaggttctctgtgtgtagtttttagtcttgaagtct 119
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatttcttgaaaaaaaaaaaagtctaggttctctgtgtgtagtttttagtcttgaagtct 659
Query: 120 caaacacaaggcagaactcattaaaggaagtcctgtcccattaagtaatatttatgggga 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 658 caaacacaaggcagaactcattaaaggaagtcctatcccattaagtaatatttatgggga 599
Query: 180 tgtaaggaagagacagacagtcctcacggacatcgggatagacattttgattagaatctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtaaggaagagacagacagtcctcacggacatcgggatagacattttgattagaatctg 539
Query: 240 caagcccacagactcactaaaaggcactataaaaagaaataacacaacctaacaagtatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 caagcccacagactcactaaaaggcactataaaaagaaataacacaacctaacaagtatt 479
Query: 300 ccaaatgcttgcttgtggttttaaagaacacagatgcttccagcagccaagtagcattgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccaaatgcttgcttgtggttttaaagaacacagatgcttccagcagccaagtagcattgc 419
Query: 360 caatccaggcagtgcaggagtggggagacaagaaagaccaatagtaatggctccgttaag 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 caatccaggcagtgcaggagtggggagacaagaaagaccaatagtaatggctccattaag 359
Query: 420 ttcaagctggaagatagctgagtgtgtact-aaagccctgttctttgttgtctccggaaa 478
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 358 ttcaagctggaagatagctgagtttgtacttaaagccctgttctttgttgtctccggaaa 299
Query: 479 acaagaagagaaccattcatggagtagattaagcaaactcttcattgctttcatcagtag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acaagaagagaaccattcatggagtagattaagcaaactcttcattgctttcatcagtag 239
Query: 539 cactctgagtctggtgac 556
||||||||||||||||||
Sbjct: 238 cactctgagtctggtgac 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 959
Length adjustment: 10
Effective length of query: 546
Effective length of database: 949
Effective search space: 518154
Effective search space used: 518154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_e06.g1 MSMg01no153_e06.g1 CHROMAT_FILE:
MSMg01no153_e06.g1 PHD_FILE: MSMg01no153_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:36 2005
(533 letters)
>mm_chr19_24578379_24579311
Length = 933
Score = 932 bits (482), Expect = 0.0
Identities = 522/538 (97%), Gaps = 7/538 (1%)
Strand = Plus / Plus
Query: 1 agtgctcaattaacagggcatttcaaatcaatgcaaaaagaaagatttctgactcatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgctcaattaacagggcatttcaaatcaatgcaaaaagaaagatttctgactcatgtt 260
Query: 61 ggttgactgcccacttattttgaaaaagatcaagttagaacccacaagtttaaacatttt 120
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 261 ggttgactgcccacttattttgaaaaagatcaagtcagaacccacaagtctaaacatttt 320
Query: 121 accttctttaatctcttatttttttataaacattttccacaatgaaaaaaagttggtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttctttaatctcttatttttttataaacattttccacaatgaaaaaaagttggtctc 380
Query: 181 tgatctctcacaaaaaataatttttgtttgtttg----gttggttggttattttttcttt 236
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tgatctctcacaaaaaataatttttgtttgtttgtttggttggttggttattttttcttt 440
Query: 237 ttcatgacagggtttctctgtgtatccctggctgttctggaactcactctgtggaccaga 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatgacagggtttctctgtgtatccctggctgttctggaactcactctgtggaccagg 500
Query: 297 cagatcttgaactcacagagatctgcctcttgatttccctcttgagtgctcggagtaaag 356
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 cagatcttgaactcacagagatctgcctcttgatttcccgcttgagtgctcggagtaaag 560
Query: 357 gtgtgtgccacaaccacctggcctaaaggactctttggttttttttttccccc-tcagat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 561 gtgtgtgccacaaccacctggcctaaaggactctttggttttttttttcccccctcaggt 620
Query: 416 ttttgttgttgttttgttttgttttgtttttgacaaaataaaaaattaaagtaaataaca 475
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 621 ttttgttgttgtt--gttttgttttggttttgacaaaataaaaatttaaagtaaataaca 678
Query: 476 ttttcccataattttctacttacagcatgacaaattcaaccacaaaaaggacccagca 533
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 679 ttttcccataattttctacttagagcatgaaaaattcaaccacaaaaaggacccagca 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
