BAC Information

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BAC

Clone NameMSMg01-154F19
Chromosome19 (Build37)
Map Location 20,723,580 - 20,723,903
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154F19.T7 (MSMg01no154_f19.b1)MSMg01-154F19.TJ (MSMg01no154_f19.g1)
ACCAG355674AG355675
length726726
length of high quality
(start - end)
346 (118 - 463)508 (68 - 575)
definitionCHROMAT_FILE: MSMg01no154_f19.b1 PHD_FILE: MSMg01no154_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:58 2005CHROMAT_FILE: MSMg01no154_f19.g1 PHD_FILE: MSMg01no154_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGGAGCCGCGGAATTCCT
GAAATACCTCAAAAGAAAGACTGACTGACTGATTAAAATGTCAGCAATAT
TGAGAGATTGTAATGCTGCAAGTCCATAGACAAATTATCTGGGAACACCT
TTAGGCCCAATAGTCAATTTTGCCCTCCTCTGAAAATGACCTAACATTCT
GGTAACCATTGGCTAAGTCCTTTGGAATGTAAGAACAGACCTTCTTTTGT
TTTAGGGAGAAATGTTCTATAGATATCTGTTAAATCCATTTGGTTCATAA
CTTTTGTTGGTTTCATGTGTCTCTGTTTAGTTTCTGTTTCCATGATCTGT
CCATTGGCGAGAGTCTCCCAATATTATTTTGTGAGGTTCAGTGTGTGCTT
TGAGCTTTAGTAAAGTTACTTTTACAAATGTGGGTGCCCTTGCAATTGGG
GAATAAATATTCAGAATTAAGAGTTCATTTTGGTAGATCTGTTCCTTTGA
TTAATATGAAGCGTCCTTCTGAAAGAAAGATGAAATTTCAAGACCTGTAA
GTCATATAAAGTACTCAGAAATTGCTGGTTGTCTGTGAGCTTATAGGCTG
CCTGGGGCTGAGAAAAAAGAAAACCTACCCCGGGTATGCTCCATAGTTAA
AACCTTCCTGGGAACAGTTTGACCATACCACAACGAGGAATGTGAGGACT
TAACAGGGCTACCCAAACTGAGTCCA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTG
GCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCTGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCTCTAAGGAACTCACACAATATGTACTCACTGATAAGCGGATATT
AGCCCAAAACCTAGGATACCCTAGATATAAGATACAATTTCCTAAACACA
TGTAATTCCAGATACATGATCACTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_f19.b1 MSMg01no154_f19.b1 CHROMAT_FILE:
MSMg01no154_f19.b1 PHD_FILE: MSMg01no154_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:58 2005
         (346 letters)



>mm_chr19_20723580_20724325
          Length = 746

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaagtccatagacaaattatctgggaacacctttaggcccaatagtcaattttgccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaagtccatagacaaattatctgggaacacctttaggcccaatagtcaattttgccctc 265

                                                                       
Query: 61  ctctgaaaatgacctaacattctggtaaccattggctaagtcctttggaatgtaagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctgaaaatgacctaacattctggtaaccattggctaagtcctttggaatgtaagaaca 205

                                                                       
Query: 121 gaccttcttttgttttagggagaaatgttctatagatatctgttaaatccatttggttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaccttcttttgttttagggagaaatgttctatagatatctgttaaatccatttggttca 145

                                                                       
Query: 181 taacttttgttggtttcatgtgtctctgtttagtttctgtttccatgatctgtccattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 taacttttgttggtttcatgtgtctctgtttagtttctgtttccatgatctgtccattgg 85

                                                                       
Query: 241 cgagagtctcccaatattattttgtgaggttcagtgtgtgctttgagctttagtaaagtt 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tgagagtctcccaatattattttgtgaggttcagtgtgtgctttgagctttagtaaagtt 25

                                   
Query: 301 acttttacaaatgtgggtgccctt 324
           ||||||||||||||||||||||||
Sbjct: 24  acttttacaaatgtgggtgccctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)