BAC Information

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BAC

Clone NameMSMg01-154M02
Chromosome19 (Build37)
Map Location 59,187,140 - 59,352,335
singlet/doubletdoublet
Overlap geneVax1, LOC668627, Kcnk18, Slc18a2
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626
Downstream genePdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154M02.T7 (MSMg01no154_m02.b1)MSMg01-154M02.TJ (MSMg01no154_m02.g1)
ACCAG355960AG355961
length667677
length of high quality
(start - end)		436 (50 - 485)290 (52 - 341)
definitionCHROMAT_FILE: MSMg01no154_m02.b1 PHD_FILE: MSMg01no154_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:28 2005CHROMAT_FILE: MSMg01no154_m02.g1 PHD_FILE: MSMg01no154_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(59,351,928 - 59,352,335)(59,187,140 - 59,187,429)
sequence
CTACCTATTCCGAGAGGATCCGCGGAATTCTCTCTCTCTCCGAAAAGAGG
TTCCATTCTTATCTATTTGATTCTGGTACCTATGTTACTCAAACAAACAA
ACTACCAGGTATGAAAAGAGTGCCTTGACTTTGGGAAGGCGCTCTACAGA
TAACTGTCCAAACACGAGGGAGAAGCATGCACATTCTTTGATACGGATCA
TTGGCAAAATGAACTATCTCACCCTTCAATAGGGACTGCTTAAAAATACA
TATCACTGGGATGCGGTCATGGATCAAGCCATAGGGTGCTTGGTGCACAA
GCGTGAGGGCTGAACTCAATCACCAAGATCCACATAAAAAGCTGGGCTTG
GTGGGTTGCACCTGTAATCCTAGCACTGGGAAAGTGGAGCCAGCCTAACT
GACTCGATGAGCTCTGAGCTCAGTGAGATGCTTTATCTCCATGGCACTGA
CCTCTAGCCTTCTTCACACACACACACACACACACACTCACACACACCCC
TCACTCACATACACACACACACACGTGTTCAAATATCTGTCCAGGGAAAA
ATCGGCAAAGAAAGGGAGTCAAAGAAGATGCCAAGAAGATGGTGGCAAGG
AAGTCCCCATGCGAACTACACTGTGCCGTGTTCACACCGCAAAGCTACAA
AATAGTCCCCTTGTGAT

GGCGGCGCCTGGTCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XATGGGAGGGACACCATAATATTTAAGAACGGTGTTGTGCAATTCGCGGC
CAAAGAGGGAGAAGAGACTTTGGAGCACGCAGATCTAAGTGGGATGCCTT
TATCAAACCCCTTTCCTCCAGGCTAAAATCGCACTGAGGGCCAAAATTTC
AGCCAGGACTCAATTTATAATCTCCACACTGATTTTTGAAGCTTCTTCCT
TCTTCCCCCTTTAGTCCAGCAGATGGGGATGGCAACATGGACCAGGGTGT
GGGCTCTAGTGAGAAGGTGGAAGGTGCTTCAGGATTTGTGTTCTAACCCG
TAATGAGGAGGGTAGACTTTTCTGGCTCTAAGAGCCAAAGTCGCTCCCCG
TGTGTCATTATAGGAAGAGGAGACACAAGGATTGTCATAGCCCAAGGCGT
TGTTGTTATTGTTGCTGATGATGGATATGCGCATAGCACTACATGTCCTA
CAGCATCTCGTATAAATGTCTATTTTGCTTGTAACGACAAATAACCCTTT
TGGTATGTATACCCTCATTTTTCCTATTCATTCCCCATCGGAATCCCATT
TTTTCCCCTAATATTTTTCCCATATGCCCACTATTCGCTCCCACTCCCCT
TATCTTCCTATCTTTCTTCTTGTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_m02.b1 MSMg01no154_m02.b1 CHROMAT_FILE:
MSMg01no154_m02.b1 PHD_FILE: MSMg01no154_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:28 2005
         (436 letters)



>mm_chr19_59351928_59352763
          Length = 836

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttccattcttatctatttgattctggtacctatgttactcaaacaaacaaactaccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gttccattcttatctatttgattctggtacctatgttactcaaacaaacaaactaccagg 349

                                                                       
Query: 61  tatgaaaagagtgccttgactttgggaaggcgctctacagataactgtccaaacacgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tatgaaaagagtgccttgactttgggaaggcgctctacagataactgtccaaacacgagg 289

                                                                       
Query: 121 gagaagcatgcacattctttgatacggatcattggcaaaatgaactatctcacccttcaa 180
           |||| |||||||||||||||||||||||||| |||||||||| |||||| || |||||||
Sbjct: 288 gagaggcatgcacattctttgatacggatcagtggcaaaatgtactatcacatccttcaa 229

                                                                       
Query: 181 tagggactgcttaaaaatacatatcactgggatgcggtcatggatcaagccatagggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tagggactgcttaaaaatacatatcactgggatgcggtcatggatcaagccatagggtgc 169

                                                                       
Query: 241 ttggtgcacaagcgtgagggctgaactcaatcaccaagatccacataaaaagctgggctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttggtgcacaagcgtgagggctgaactcaatcaccaagatccacataaaaagctgggctt 109

                                                                       
Query: 301 ggtgggttgcacctgtaatcctagcactgggaaagtggagccagcctaactgactcgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ggtgggttgcacctgtaatcctagcactgggaaagtggagccagcctaactgactcgatg 49

                                                           
Query: 361 agctctgagctcagtgagatgctttatctccatggcactgacctctag 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  agctctgagctcagtgagatgctttatctccatggcactgacctctag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_m02.g1 MSMg01no154_m02.g1 CHROMAT_FILE:
MSMg01no154_m02.g1 PHD_FILE: MSMg01no154_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:28 2005
         (290 letters)



>mm_chr19_59186940_59187629
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggagggacaccataatatttaagaacggtgttgtgcaattcgcggccaaagagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 atgggagggacaccataatatttaagaacggtgttgtgcaattcgcggagaaagagggag 260

                                                                       
Query: 61  aagagactttggagcacgcagatctaagtgggatgcctttatcaaacccctttcctccag 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagactttggagcactcagatctaagtgggatgcctttatcaaacccctttcctccag 320

                                                                       
Query: 121 gctaaaatcgcactgagggccaaaatttcagccaggactcaatttataatctccacactg 180
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gctacaatcgcactgagggccaaaatttcagccaggactcaatttataatctccacgctg 380

                                                                       
Query: 181 atttttgaagcttcttccttcttccccctttagtccagcagatggggatggcaacatgga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atttttgaagcttcttccttcttccccctttagtccagcagatgtggatggcaacatgga 440

                                                             
Query: 241 ccagggtgtgggctctagtgagaaggtggaaggtgcttcaggatttgtgt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagggtgtgggctctagtgagaaggtggaaggtgcttcaggatttgtgt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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