BAC Information

Click to search

BAC

Clone NameMSMg01-154P08
Chromosome19 (Build37)
Map Location 13,093,837 - 13,094,407
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1
Downstream geneOlfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154P08.T7 (MSMg01no154_p08.b1)MSMg01-154P08.TJ (MSMg01no154_p08.g1)
ACCAG356108AG356109
length692690
length of high quality
(start - end)
574 (49 - 622)452 (72 - 523)
definitionCHROMAT_FILE: MSMg01no154_p08.b1 PHD_FILE: MSMg01no154_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:44 2005CHROMAT_FILE: MSMg01no154_p08.g1 PHD_FILE: MSMg01no154_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAATACTCCGAGCATCGGCATTTTATCTTGTAATGGGGAAA
AACTTATGAGGGCTGACCCATTCTTGAGGACTATTGACAGTTAATGATGG
ATGGTGCATTATATTTTTCATTAGTAAGTTGGTCGTGCCCCAATAAATAA
TCCCCTCATGTCACTCATATAAACAAACTTATTTTAACTCAGTGGGCCAT
GCATAAAAGCTATGAAAGTTGGAAGGAAAGTTGTTAAGAAGAAGGGTTTC
ATTGGGAGAAGAAGGGGGTGAGTAAGGGTACTAAGGGGTAAGAAGGACTA
TACTTCCTTATAAACATGTATAAAATTCTTGAATAATAAATTTTCTAAAT
TGAATTGTCACTTGATATTTAATTTTATGATTTAAATTTAAGCCTAATAT
TTTCTGTTACTTCTACAACTTTAGATGTTTTCTCTGCTCATTTATATACT
ATTTGTCATTCACCACATAGACTATCTCCTCACATGATCTATCTTCTTCA
AAGACTTTATTAACACTTACTACATGGGCTTACTAGAAGCATTTCTATTC
CTCTCTAATTAAACTCTTAATCACAGTATAGAAGTGACTCTAACTCTTTT
AAAGAAGCCAAATATATACAATGAAAAAAAGAAAACATCATT
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCCGAGAAATTCTCAGTCCCATCAAAAATTCCTAGG
ATAAATAATATGTTAGTCAAAATCTTGAAATAATTAACTTAAAAAAGGCT
CCTTGTAATGGAGGATATGGAGTCTGAACTGTTCATCTCTTATAGCCAAA
CAAGGCTTCCAGTTGCAGGACTATACTGTGTTTGGTTTGGTGTTGAGCAA
GTGGATACAGTGGAAACCCCCAAACAACTCTGGTTGATGATAGGACCAAA
AGTTTACCTCTATACACAGACAGTGAGGACCTACTGCTGAGGACACATTT
ACACAGGTCATTGAACATTGAATTTACAGAGGTGGAGTAGGTGTCTGAAC
AGAGATTTCAGCCCTACATTCTGATCTTTTGGTGCAGGAAGTTATTCAGC
AGTCTACCAAAAAAGAAACATGAACATGAACCCAGTCACAAAGCATACTA
TCTATCCTACCTCCAAGATGTGCTCCTCCAATGGTGACTCAGAACATGTG
TGAGTGGCCAAAGAATATCCAATTTGTGAATAATAATCTATTGTGTAAAT
ATATCATTTTTTCATTATCCGCGCATTAGCTGATGGTTATCTAGGATGTT
TCCAAGTTCCAATGTTATATAAAGGACATCCATGAACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_p08.b1 MSMg01no154_p08.b1 CHROMAT_FILE:
MSMg01no154_p08.b1 PHD_FILE: MSMg01no154_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:44 2005
         (574 letters)



>mm_chr19_13093634_13094607
          Length = 974

 Score = 1042 bits (539), Expect = 0.0
 Identities = 563/571 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataatactccgagcatcggcattttatcttgtaatggggaaaaacttatgagg 63
           ||||||||||| |||  ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcataagactgggagcatcagcattttatcttgtaatggggaaaagcttatgagg 263

                                                                       
Query: 64  gctgacccattcttgaggactattgacagttaatgatggatggtgcattatatttttcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgacccattcttgaggactattgacagttaatgatggatggtgcattatatttttcat 323

                                                                       
Query: 124 tagtaagttggtcgtgccccaataaataatcccctcatgtcactcatataaacaaactta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagtaagttggtcgtgccccaataaataatcccctcatgtcactcatataaacaaactta 383

                                                                       
Query: 184 ttttaactcagtgggccatgcataaaagctatgaaagttggaaggaaagttgttaagaag 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttaactcagtgggccacgcataaaagctatgaaagttggaaggaaagttgttaagaag 443

                                                                       
Query: 244 aagggtttcattgggagaagaagggggtgagtaagggtactaaggggtaagaaggactat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagggtttcattgggagaagaagggggtgagtaagggtactaaggggtaagaaggactat 503

                                                                       
Query: 304 acttccttataaacatgtataaaattcttgaataataaattttctaaattgaattgtcac 363
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 acttccttataaacatgtataaaattcttgaatagtaaattttctaaattgaattgtcac 563

                                                                       
Query: 364 ttgatatttaattttatgatttaaatttaagcctaatattttctgttacttctacaactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgatatttaattttatgatttaaatttaagcctaatattttctgttacttctacaactt 623

                                                                       
Query: 424 tagatgttttctctgctcatttatatactatttgtcattcaccacatagactatctcctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 tagatgttttctctgctcatttatatactatttgtcattcaccacatagaccatctcctc 683

                                                                       
Query: 484 acatgatctatcttcttcaaagactttattaacacttactacatgggcttactagaagca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acatgatctatcttcttcaaagactttattaacacttactacatgggcttactagaagca 743

                                          
Query: 544 tttctattcctctctaattaaactcttaatc 574
           |||||||||||||||||||||||||||||||
Sbjct: 744 tttctattcctctctaattaaactcttaatc 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)