BAC Information

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BAC

Clone NameMSMg01-155E02
Chromosome19 (Build37)
Map Location 25,225,418 - 25,225,932
singlet/doubletsinglet
Overlap geneDock8
Upstream geneTjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, LOC100042503
Downstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E02.T7 (MSMg01no155_e02.b1)MSMg01-155E02.TJ (MSMg01no155_e02.g1)
ACCAG356316AG356317
length734729
length of high quality
(start - end)
623 (44 - 666)520 (76 - 595)
definitionCHROMAT_FILE: MSMg01no155_e02.b1 PHD_FILE: MSMg01no155_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:07 2005CHROMAT_FILE: MSMg01no155_e02.g1 PHD_FILE: MSMg01no155_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTAT
CCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTAGTTTCTACTTTGCAGAGTTC
ACGAGCCCTCAATGCACAGCTGTTTCCTACTGAGAAGGTAGAGCCTACAG
TCTCTCCAGTAATCTGTCCCAGATTCCAACTGTGCCTGCAGAGCAACCTC
ACCAGTTACCCACTACATAGACAGATAGACAGACAGACAGACAGACAGAC
AGACACACACACACACACACACACACACACACGAGCGAGCCTGAACTTTG
GCCACTCCTGGTTCCCCTGGATGGCAGCTCCTTGCAGGAAACCTCTGGAT
GGTTGACTGGGCAGAGCTTTTTTCTCTGGCACAGCCCAGTGAGGCTCTGG
TGTCTCCTCCTCTGGTCACATCTTTCTCCTCGATAAGGTACCACACCCCT
CAAAGCCCAGGAGAACCCTTGCATTTTGCAAACTTAGGAAACCAAGAGAC
ACAGAGATGACATTTAAAGCCATCCCATTACTAACTGTTCCGAGTCTCAG
TGATGGTGGCGGTGATGGCAGCCTGGGAGAGGGGGTGGTGGCTGTTGTGG
TTGTGGTAATAGTGGCAGACATGGTGGCCATGCCGAACAGAACACTATGG
AAAAAGATGCTGTTTCCCCCTATTATGTTCTTATTGCCCGGACCTTCCGA
TATTCAACCTCCTTGACCGATTTTGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e02.g1 MSMg01no155_e02.g1 CHROMAT_FILE:
MSMg01no155_e02.g1 PHD_FILE: MSMg01no155_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:07 2005
         (520 letters)



>mm_chr19_25225014_25225932
          Length = 919

 Score =  804 bits (416), Expect = 0.0
 Identities = 491/520 (94%), Gaps = 13/520 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   agtttctactttgcagagttcacgagccctcaatgcacagctgtttcctactgagaaggt 64
           |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 919 agtttctactttgcagagctcaggagccctcaatgcatagctgtttcctactgagaaggt 860

                                                                       
Query: 65  agagcctacagtctctccagtaatctgtcccagattccaactgtgcctgcagagcaacct 124
           ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 859 agagcctacagcccctccagtaatctgacccagattccaactttgcctgcagagcaacct 800

                                                                       
Query: 125 caccagttacccactacatagacagatagacagacagacagacagacagacag----aca 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||
Sbjct: 799 caccagttacccactacatagacagacagacagacagacagacagacagacagacacaca 740

                                                                       
Query: 181 cacacacacacacacacacacacacacgagcgagcctgaactttggccactcctggttcc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 739 cacacacacacacacacacacacacacgagcaagcctgaactttggccactcctggttcc 680

                                                                       
Query: 241 cctggatggcagctccttgcaggaaacctctggatggttgactgggcagagcttttttct 300
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cctggatggcagctcctttcgggaaacctctggatggttgactgggcagagcttttttct 620

                                                                       
Query: 301 ctggcacagcccagtgaggct-ctggtgtctcctcctctggtcacatctttctcctcgat 359
           ||||| ||||||||||||||| || ||||   |||||||||||||| |||||||||||||
Sbjct: 619 ctggcgcagcccagtgaggctcct-gtgt---ctcctctggtcacacctttctcctcgat 564

                                                                       
Query: 360 aaggtaccacacccctcaaagcccag--gagaacccttgcattttgcaaacttaggaaac 417
           ||||||||||||||||||||||||||  ||||||||||||||||||  |||  |||||||
Sbjct: 563 aaggtaccacacccctcaaagcccagcagagaacccttgcattttg-taaccaaggaaac 505

                                                                       
Query: 418 caag-agacacagagatgacatttaaagccatcccattactaactgttccgagtctcagt 476
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagaagacacagagatgacatttaaagccatcccattactaactgttccgagtctcagt 445

                                                   
Query: 477 gatggtggcggtgatggcagcctgggagagggggtggtgg 516
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatggtggcggtgatggcagcctgggagagggggtggtgg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space:   463590
Effective search space used:   463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)