BAC Information

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BAC

Clone NameMSMg01-155E03
Chromosome19 (Build37)
Map Location 25,225,531 - 25,225,936
singlet/doubletsinglet
Overlap geneDock8
Upstream geneTjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, LOC100042503
Downstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E03.T7 (MSMg01no155_e03.b1)MSMg01-155E03.TJ (MSMg01no155_e03.g1)
ACCAG356318AG356319
length732746
length of high quality
(start - end)
597 (45 - 641)418 (75 - 492)
definitionCHROMAT_FILE: MSMg01no155_e03.b1 PHD_FILE: MSMg01no155_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005CHROMAT_FILE: MSMg01no155_e03.g1 PHD_FILE: MSMg01no155_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGTAGTTTTTATCACAATTGCTC
TGTAGCCAAGCTTTAGGTCTGGCATGCTGATTCTGCCAGAAGTTTTTTTA
TCCTTGAGAACACTTTTTGCTTTCCTAGGTTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTAGTTTCTACTTTGCAGAGTTCA
CGAGCCCTCAATGCACAGCTGTTTCCTACTGAGAAGGTAGAGCCTACAGT
CTCTCCAGTAATCTGTCCCAGATTCCAACTGTGCCTGCAGAGCAACCTCA
CCAGTTACCCACTACATAGACAGATAGACAGACAGACAGACAGACAGACA
GACACACACACACACACACACACACACACATGAGCGAGCCTGAACTTTGG
CCACTCCTGGTTCCCCTGGATGGCAGCTCCTTGCAGGAAACCTCTGGATG
GTTGACTGGGCAGAGCTTTTTTCTCTGGCACAGCCCAGTGAGGCTCTGGT
GTCTCCTCCTCTGGCCACATCTTTCTCCTCGATAAGGTACCACACCCCTC
AAAGCCCAGGAGAACCCTTGCATTTTGCAAACTTAGGAAACCAAGAGACA
CAGAGATGACATTTAAAGCCATCCCATTACTAACTGTTCCGAGTCTCAGT
GATGGCGGCGGCGATGGCAGCCTGGCAGAGGTGGTGCTGACTGCTTGTGC
CGTTAAAATCCTTTTTTCCATGGTCGCCCATGCCCGATACCCTATCCTCG
TTTTACCTTTTCCCCTTTTCCCCCTTTTTTTCTTTTCCTGTTTACCCTAT
TCCCCCACTTATCCCATTTCCGCCCCCTCTACCCTCCTATTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e03.g1 MSMg01no155_e03.g1 CHROMAT_FILE:
MSMg01no155_e03.g1 PHD_FILE: MSMg01no155_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:08 2005
         (418 letters)



>mm_chr19_25225124_25225940
          Length = 817

 Score =  615 bits (318), Expect = e-180
 Identities = 384/410 (93%), Gaps = 11/410 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttagtttctactttgcagagttcacgagccctcaatgcacagctgtttcctactgaga 60
           |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct: 813 ctttagtttctactttgcagagctcaggagccctcaatgcatagctgtttcctactgaga 754

                                                                       
Query: 61  aggtagagcctacagtctctccagtaatctgtcccagattccaactgtgcctgcagagca 120
           ||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 753 aggtagagcctacagcccctccagtaatctgacccagattccaactttgcctgcagagca 694

                                                                       
Query: 121 acctcaccagttacccactacatagacagatagacagacagacagacagacagacag--- 177
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   
Sbjct: 693 acctcaccagttacccactacatagacagacagacagacagacagacagacagacagaca 634

                                                                       
Query: 178 -acacacacacacacacacacacacacacatgagcgagcctgaactttggccactcctgg 236
            ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 633 cacacacacacacacacacacacacacacacgagcaagcctgaactttggccactcctgg 574

                                                                       
Query: 237 ttcccctggatggcagctccttgcaggaaacctctggatggttgactgggcagagctttt 296
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 573 ttcccctggatggcagctcctttcgggaaacctctggatggttgactgggcagagctttt 514

                                                                       
Query: 297 ttctctggcacagcccagtgaggct-ctggtgtctcctcctctggccacatctttctcct 355
           ||||||||| ||||||||||||||| || ||||   ||||||||| |||| |||||||||
Sbjct: 513 ttctctggcgcagcccagtgaggctcct-gtgt---ctcctctggtcacacctttctcct 458

                                                             
Query: 356 cgataaggtaccacacccctcaaagcccag--gagaacccttgcattttg 403
           ||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 457 cgataaggtaccacacccctcaaagcccagcagagaacccttgcattttg 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 817
Length adjustment: 9
Effective length of query: 409
Effective length of database: 808
Effective search space:   330472
Effective search space used:   330472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)