BAC Information

Click to search

BAC

Clone NameMSMg01-155M22
Chromosome19 (Build37)
Map Location 47,343,940 - 47,344,378
singlet/doubletsinglet
Overlap geneSh3pxd2a
Upstream geneGbf1, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070
Downstream geneObfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M22.T7 (MSMg01no155_m22.b1)MSMg01-155M22.TJ (MSMg01no155_m22.g1)
ACCAG356718AG356719
length1,015721
length of high quality
(start - end)
---439 (77 - 515)
definitionCHROMAT_FILE: MSMg01no155_m22.b1 PHD_FILE: MSMg01no155_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:47 2005CHROMAT_FILE: MSMg01no155_m22.g1 PHD_FILE: MSMg01no155_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAAAGAG
ATCCGCGGNAATTCNCAGGACAGTTCCCAGCTACACAGAAGAAACCCTTG
GTCTCTAAAAAAAAACAAACCAAAGCAATTTTATTTTTACTTCGCACGTT
ANNCGTGTTTGGGGGTGGTGAAGTATACATTACGTGGTGGTTCTCAACAG
TGGCTTGTANNAAGACCAGAAGCCACTGGGGGTCTTTCCTAAGAGCTTCA
AGCTTACACGGTGGGTTGGAGAAGCCGCCTGGAATGTGTGTTTCCTGGAA
ACCTAACCGTCTTGGTCCCTTTGCAAAACTTGGTGCNCCACTATTTGACC
CTATGCTAATCCCCCTTGTAAAAAGGGAATTTTTTTATTCCTTCCTACCC
CACTATTGCCCTACCAATTCCAAGGTTTCTTTTCCTATTAACGGCCCCCC
CCCAAAAAACCCTTTTCGGCNGCNNTTNCCCTGAGCTGCAATTGAATTTN
GTTTTTAATTGGCGAATTAAACGCCCTTTTCTCCGGAAAACTCCCATTTT
ATCTTTATATTTTATATAACACCTTTTTTTCCTTTTCCTTTTTTCTTTTC
CCCCGCGCGCGTCTACTTTTTTTTCCCCCCTTAACCGCGCTTTTGTGGGT
GTTTCCCGCGCCTTTTCCCTCTTTATTCNNATTTAGNNNNNNNNNNNANT
TTACTCTTGCTTAAGGCNTTTNNTNNTNNNAAGTTNTNTTTTNTTTNCTT
ACTNNNNNCGCTTATTNTTCCGNGTGNCTTGGNNGTTTTTCCCCNTNCCN
NTCCCCCCTCTTCCCCCCTCTTTTTTTCCCTTTTCTCTCCCCTTTTTTAT
CACACTATTATATAAGAGAGAACCTTTTCCTCNNCTNNCCCCCTNTTCTC
TTTTTTTTTCCATTTTCTCCCCTCTTTCCTCTTTCTCTCCCCCCCTTTTC
TTTTTTCTCCCCTCTTTTCTTGATCGTGTGTGTTGTTTATTTCTTGGCCC
TTTTTCTTGTTTTCN
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCAGAAATTCCAGTCCTGCATTTCTGACGGGATC
AGCTTTCGAGGCGGACAGAAGGCAGAGGTGAGCCTCCTTCAGACCAAGGA
CCTGTGTTTCATATTTTATAATATGTCTTCTTGGCAAGGCTTCTGGGGGT
CAATCAGGGCAGGTAACAGAAATGAGCTGCCCGGCCATGAGTACTTGCCT
AGTCAGGGCCACACCAGGGCTAAAGCCCACAACTTGGGTTTCTGTCCCTC
ACTCACTTGCTTGTCCCACAATGACATCTCCTGAGCACAGAGAGCCTCGA
AGTGAAGTGCTGATGAGGGACAGAAAGATGACAGAGCAGTTTGCTTCATC
AGAAATGTTTTATTTTGGAGGGGATAACACACACGCACACACATGAGTAC
ATGCACGCACATGCACACACATGCATGCAACACAACACATGCAACCATAC
ATGCTTGTACACACACACACACACACACACACACACTCACACATGTATGC
GGAGATCAGTCTTGTCTACTAACCCAAGAAATCTCTTGCCTAACGAGGTT
TTTGTGGCCACTTGCAGGATGTTCTGCGCCGATGAGCTGGTCTCACGCTT
GCATTTCCGCCTAGATTGTATGCCTTTTCTCTTTTTCACCTGATAGACCC
TTCGAAGCCATAGTGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m22.g1 MSMg01no155_m22.g1 CHROMAT_FILE:
MSMg01no155_m22.g1 PHD_FILE: MSMg01no155_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:47 2005
         (439 letters)



>mm_chr19_47343829_47344667
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcctgcatttctgacgggatcagctttcgaggcggacagaaggcagaggtgagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cagtcctgcatttctgacgggatcagctttcgaggcggacagaaggcagaggtgagcctc 491

                                                                       
Query: 61  cttcagaccaaggacctgtgtttcatattttataatatgtcttcttggcaaggcttctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttcagaccaaggacctgtgtttcatattttataatatgtcttcttggcaaggcttctgg 431

                                                                       
Query: 121 gggtcaatcagggcaggtaacagaaatgagctgcccggccatgagtacttgcctagtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gggtcaatcagggcaggtaacagaaatgagctgcccggccatgagtacttgcctagtcag 371

                                                                       
Query: 181 ggccacaccagggctaaagcccacaacttgggtttctgtccctcactcacttgcttgtcc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 370 ggccacaccagggctaaagcccacaacttgagtttctgtccctcactcacttgcttgtcc 311

                                                                       
Query: 241 cacaatgacatctcctgagcacagagagcctcgaagtgaagtgctgatgagggacagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cacaatgacatctcctgagcacagagagcctcgaagtgaagtgctgatgagggacagaaa 251

                                                                       
Query: 301 gatgacagagcagtttgcttcatcagaaatgttttattttggaggggataacacacacgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gatgacagagcagtttgcttcatcagaaatgttttattttggaggggataacacacacgc 191

                                                                       
Query: 361 acacacatgagtacatgcacgcacatgcacacacatgcatgcaacacaacacatgcaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acacacatgagtacatgcacgcacatgcacacacatgcatgcaacacaacacatgcaacc 131

                              
Query: 421 atacatgcttgtacacaca 439
           |||||||||||||||||||
Sbjct: 130 atacatgcttgtacacaca 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)