Query= MSMg01no156_p11.b1 MSMg01no156_p11.b1 CHROMAT_FILE:
MSMg01no156_p11.b1 PHD_FILE: MSMg01no156_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:13 2005
(687 letters)
>mm_chr19_17700215_17701301
Length = 1087
Score = 1100 bits (569), Expect = 0.0
Identities = 667/725 (92%), Gaps = 44/725 (6%)
Strand = Plus / Plus
Query: 4 ggaattcaaacatgagaatttccagagtgctttcttaggaaagaaaggaaaaggaaaatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ggaattcaaacatgagaatttccagagtgctttcttaggaaagaaaggaaaaggaaaatg 225
Query: 64 ggaaagtagctttggcaggagagaaaagagaaacccaagttcagaaagcagctcgac--- 120
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 226 ggaaagtagctttgg-aggagagaaaagagaaacccaagttcagaaagctgctcgacttt 284
Query: 121 ------tcc-------a-----------------------gctgtgctggaggctttaag 144
||| | ||||||||||||||||||||
Sbjct: 285 ctgctttcctctgatgactctgcttctgcctccctctggtgctgtgctggaggctttaag 344
Query: 145 tatactattcactcaatgcatgcaaaataactcacccaccccacccaccaggacagggac 204
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 345 tatgctattcactcaatgcatgcaaaataactcacccaccccacccaccaggacaggtac 404
Query: 205 agaaaacactgctgtttcccttttacagatatggaagcctagctttagaaagtttcacac 264
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 405 agaaaacactgctgtttcccttttacagatatggaagcccagctttagaaagcttcacac 464
Query: 265 ctttcaaagccgaacagctagtaagataatcaaagcagggatttgaagccaggcaatgtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctttcaaagccgaacagctagtaagataatcaaagcagggatttgaagccaggcaatgtc 524
Query: 325 ctccagagcccagatgtccatgctccaacatagaggttaccaaagtcaaatgcgactgtg 384
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 525 ctccagagcccagacgtccatgctccaacatagaggttaccaaagtcaaatgtgactgtg 584
Query: 385 aaaagccaaggagggctgaaatgtctcagtaagttcacaagtattaaagagtcaaaccac 444
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 585 aaaagccaaggagggctgaaatggctcagtaagttcacaagtattaaagagtcaaaccat 644
Query: 445 ctcgattggttctaaaaatatatatatacttcatgataaatataaagagaaatttcttaa 504
||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 645 ctcgattggttgtaaaaatatatata--cttcatgataaatataaagagaaaattcttaa 702
Query: 505 agcttttattaaagaattaaaaaaaaaactaagcctaaacaaagtatgatctggcttaag 564
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 703 agcttttattaaagaattaaaaaaaaaactaagcctaaacaaagcatgatctggcttaag 762
Query: 565 gtgtccgtgaaaaattagttctagaagagaataaagaatcatttttttt--cttttctac 622
|||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct: 763 gtgtccgtgaaaaattagttttaggagagaataaagaatcattttttttttcttttctac 822
Query: 623 tgaaagtaaatgaagtcaagagtttcagtttaggctcattcctcagaagtgatagcagat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tgaaagtaaatgaagtcaagagtttcagtttaggctcattcctcagaagtgatagcagat 882
Query: 683 gacac 687
|||||
Sbjct: 883 gacac 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_p11.g1 MSMg01no156_p11.g1 CHROMAT_FILE:
MSMg01no156_p11.g1 PHD_FILE: MSMg01no156_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:13 2005
(287 letters)
>mm_chr19_17815420_17816106
Length = 687
Score = 501 bits (259), Expect = e-146
Identities = 280/287 (97%)
Strand = Plus / Minus
Query: 1 aaattctaaaattctacaagacaatctctatactgctgctttcctttgattttgttgaca 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 487 aaattctaaaattctacaagacaatctctattctgctgctttcctttgattttgttgcca 428
Query: 61 gtgaacttggttaggacattaatggagggaaagaaatccagtgatttctttcacaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgaacttggttaggacattaatggagggaaagaaatccagtgatttctttcacaaagaa 368
Query: 121 ggagataccacctaggttgcttggaggaagagaaagtaataattaccttcatgtcagtct 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggaaataccacctaggttgcttggaggaagagaaagtaataattaccttcatgtcagtct 308
Query: 181 gaattattagttttacgatgtaaaaagtacttggtgggccagccctgcccaggatgggat 240
||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 307 gaattatcagtttgacaatgtaaaaagtacttggtgggccagctctgcccaggatgggat 248
Query: 241 tctacgctagggatggtagccaatctggaggggtgcaagtgagggag 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctacgctagggatggtagccaatctggaggggtgcaagtgagggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
