BAC Information

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BAC

Clone NameMSMg01-157G03
Chromosome19 (Build37)
Map Location 41,635,213 - 41,635,501
singlet/doubletsinglet
Overlap genenone
Upstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor
Downstream geneAI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G03.T7 (MSMg01no157_g03.b1)MSMg01-157G03.TJ (MSMg01no157_g03.g1)
ACCAG357877AG357878
length719703
length of high quality
(start - end)
323 (37 - 359)290 (69 - 358)
definitionCHROMAT_FILE: MSMg01no157_g03.b1 PHD_FILE: MSMg01no157_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:42 2005CHROMAT_FILE: MSMg01no157_g03.g1 PHD_FILE: MSMg01no157_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATG
GAATGGAAAGCCTTTTGACACTTCCAGGGGCTGTAGAAGATTCAAACTAG
TACCTGCCTTCAACCCCAGGCAGAGGCAGGTTTATTTTCTGAGTTTGAGA
CCAGCCTGGAAGCAGAGAGAGAGGAAGAGCGAGAGATAGAGAGAGACAGA
GACAGACAGAGAGAGGCAGAGACAGAAAGAGACACAGAGAGAGAGATAGG
GAGAGAGAGACAGGGAGAGAGAGAGAGACAAAAAGATGTCCTCAATGCAT
ATTTGTAGATGATCAAAAACAGTCACAGGCAAAAGTGACTGAAAGTATTC
CTTCCTATTATGCTCCCTGCACCAGCTTAGTTGTCCCTCAGTTGTGGCTT
CTGATGTTGTTTAATTGTTGACTCTAAAACTAATGGGAGGTGAAGCCTGG
GATAATCTGAGTGTATAGAGTGTTCACCGAGCATCCTCGGAGTCCTGAGC
TTGCTCCCTGGGACAGAAAAAACCCAGAAATGTAGGGAGGCTGCCTGTAA
TTCCAGCTCTTGGAAGGTGGAGGCAGAATCAGAAGTTCAAGGTCACTTCC
CATTAATTAACGGTTTGAGGCCAGCCGGGCTACACAAGGTCCTGTCTCAA
AACAAAACTATTAGTAGTTGATCATAAGCCTTGAAATGAGAGAGAATAGG
GCTGGGCGGTGTGAATCAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATAAGTAAAGCCAGTGGAATGTAATCTTT
ACAATCATCAGATTAAAATTACTATTTTGTGCAAAGCAAAATCCACACCA
CACATATCCTATATGCTAGTCTTCTGAGAAAGGTGATTAGACCCTTCTAA
ATGCTTAGCCAAACCGTAAAATCATTGACATTTCTGAGTAAAATAAAAAA
GTAGCCAGTGTTCCTTAGGTTAAAATTGGTCATTCCGGGAGAGTACTAAC
AACTTGAGAAGTAGTGCGAATATGTCCAGATAGTCCTCAGGCACAGATTC
CTGACTGATAACTTCCACCCCATTAATTCAATTAGGTAAAAGATAGATTT
CACTCGCAACCTGTGAGTTCAAAGGTTAGGCACACCATTGCTGCTGTTAA
AATTAAGACACTGCACATTTTTGACATAGGTTGGGTGTGGATTCCTCTTT
TGATTTGGTTATTTTGTAAAGCAATTTAATCAGTGGATGACCGCCTGTTT
CTTGGCTTTTTAGTCTCAACAGGCAAAGAGTTTGGTAATATTAATGTGAC
TGCAATATTTCCTAGCCTAGCTGGAAGTTGCAATAAAAACACAATATGAG
ATGCATGATTTTCATCTGCAATTGAAGGAAGTTGTGTGAGGTTTGCTGAA
ACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g03.g1 MSMg01no157_g03.g1 CHROMAT_FILE:
MSMg01no157_g03.g1 PHD_FILE: MSMg01no157_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:43 2005
         (290 letters)



>mm_chr19_41635013_41635701
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgataagtaaagccagtggaatgtaatctttacaatcatcagattaaaattactatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgataagtaaagccagtggaatgtaatctttacaatcatcagattaaaattactatttt 260

                                                                       
Query: 61  gtgcaaagcaaaatccacaccacacatatcctatatgctagtcttctgagaaaggtgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaaagcaaaatccacaccacacatatcctatatgctagtcttctgagaaaggtgatt 320

                                                                       
Query: 121 agacccttctaaatgcttagccaaaccgtaaaatcattgacatttctgagtaaaataaaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 agacccttctaaatgcttagccaaaccgtaaaat-attgacatttctgagtaaaataaaa 379

                                                                       
Query: 181 aagtagccagtgttccttaggttaaaattggtcattccgggagagtactaacaacttgag 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 aagtagccagtgttccttaggttaaaattggtcattctgggagagtactaacaacttgag 439

                                                             
Query: 241 aagtagtgcgaatatgtccagatagtcctcaggcacagattcctgactga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagtagtgcgaatatgtccagatagtcctcaggcacagattcctgactga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)