XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCTTATACCCGATGCTCATCCTATGCTTCCTGGATCAACCACTTGCTTG
GAGAAAGGAATCATAGATCAACATAGTGCTGTTGTTTGTAGGAAAAGGGT
CCCCACACTCTCCCTCTCCTTTGGTTCTCTCTGCATCCTGAGGCATGCTA
TAGAGCATTCCAGAAGCAACCCTGGAGATCTCATCAGTTACCTCTGCAAT
CAGGCTTGTTGGGTCTCCCTTCTCTTTGCAGCCACCATTTAGAAAAGGAC
ATAGACTGACAGGGTTAGGTTTGGTGAGCATGCCTACTGTATCATGAGAT
CCTCACCCTTCCATATCAGCACCTACTGCCTTCTCTTCCATTGGTGGCAT
TCTCTGCAAAAAGATTAAATCAAAAATTCTGAGCCTGCCACAAAACAACA
GATTAATTGCTGTTTTTCCCCTTCTTCATTCAAGCTTAATGATCCTCTCC
TTAAGACTAACCCATAATTATTGTTAAGAGTTCAGTTCATTCGTTCAGTA
ATGAGGAGCCACAAACTCTTTCTCAACATATCTAATTTAAATGGTCTTCT
CTAAATGGTAGCTACGACACGGTGACAAGACAGTACATAAGCTCAGATTT
TCTGTTGTTGTTAAGTACAAATATTTTGATAAGTGCAGCTAATATGAGAT
ATTTCCTCTTAGCTGGATATGATACA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAACAGCATGAGGTGCTCAGGACATGTA
GTCCTCAGGATTATCCCTTAACCAAGGCACACCTACTATGGGTGTGCAAA
CCTAACTGGTGGGCCACTTTCCATCAGTTCTAAAGCCATTTGTCAAATGG
CCCTTGGCAGCATTCCTTGTGCTGTGGTCATTTTTCCTTACTCCATACTA
GCTTTAGGGCACAATGACTATCCTTAGCTTTATCTGACAGATGAGGGACT
TTAGTACACAGAGATATCAACTACTTGCCAGGGTCACACAGCATAAAGGA
CAGAGTGATTTTTTGACCACCCCAACAATATACCAAGCTGTCTCTGAAGA
TGGAGTTCTTTGGTCAGTAGAGAACCACCAGCACAGACTTTATGAGGAAT
GAAATTCCTGGGTCTCTTCCCAAGTATCCAGAATCAGGGACGCAGTATGT
GCCCAGCCACCCTTTCTAATAAGAGCCTTGGTAGTCTGATGAGGATAGAG
CTAGAAAGGTTGCTGAGCAGACTCCCAGAACCTTGCCTTTAAGCTGCAGG
GGGCTAGGTTCCGAGCTTCAATGCTGTCCCCTGATCCTTTTTCCCAGCCC
CAGCTGCCTCCATGTTGTCTGGACTTACTAAGAAATGAGGGCCTCCTTTC
CAGATCCGCTCATCAATTAAGACAAGCC

Query= MSMg01no157_l01.b1 MSMg01no157_l01.b1 CHROMAT_FILE:
MSMg01no157_l01.b1 PHD_FILE: MSMg01no157_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:05 2005
         (686 letters)



>mm_chr19_60466949_60468035
          Length = 1087

 Score = 1243 bits (643), Expect = 0.0
 Identities = 673/683 (98%), Gaps = 1/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcttatacccgatgctcatcctatgcttcctggatcaaccacttgcttggaga 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcttagacaagatgctcatcctatgcttcctggatcaaccacttgcttggaga 264

                                                                       
Query: 65  aaggaatcatagatcaacatagtgctgttgtttgtaggaaaagggtccccacactctccc 124
           ||||||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 265 aaggaatcacagattaacatagtgctgttgtttgtaggaaaagggtcccctgactctccc 324

                                                                       
Query: 125 tctcctttggttctctctgcatcctgaggcatgctatagagcattccagaagcaaccctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcctttggttctctctgcatcctgaggcatgctatagagcattccagaagcaaccctg 384

                                                                       
Query: 185 gagatctcatcagttacctctgcaatcaggcttgttgggtctcccttctctttgcagcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagatctcatcagttacctctgcaatcaggcttgttgggtctcccttctctttgcagcca 444

                                                                       
Query: 245 ccatttagaaaaggacatagactgacagggttaggtttggtgagcatgcctactgtatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatttagaaaaggacatagactgacagggttaggtttggtgagcatgcctactgtatca 504

                                                                       
Query: 305 tgagatcctcacccttccatatcagcacctactgccttctcttccattggtggcattctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagatcctcacccttccatatcagcacctactgccttctcttccattggtggcattctc 564

                                                                       
Query: 365 tgcaaaaagattaaatcaaaaattctgagcctgccacaaaacaacagattaattgctgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcaaaaagattaaatcaaaaattctgagcctgccacaaaacaacagattaattgctgtt 624

                                                                       
Query: 425 ttt-ccccttcttcattcaagcttaatgatcctctccttaagactaacccataattattg 483
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 ttttccccttcttcattcaagcttaataatcctctccttaagactaacccataattattg 684

                                                                       
Query: 484 ttaagagttcagttcattcgttcagtaatgaggagccacaaactctttctcaacatatct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaagagttcagttcattcgttcagtaatgaggagccacaaactctttctcaacatatct 744

                                                                       
Query: 544 aatttaaatggtcttctctaaatggtagctacgacacggtgacaagacagtacataagct 603
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 745 aatttaaatggtcttctctaaatggtagctacgacacggtgacaagatagtacataagct 804

                                                                       
Query: 604 cagattttctgttgttgttaagtacaaatattttgataagtgcagctaatatgagatatt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagattttctgttgttgttaagtacaaatattttgataagtgcagctaatatgagatatt 864

                                  
Query: 664 tcctcttagctggatatgataca 686
           |||||||||||||||||||||||
Sbjct: 865 tcctcttagctggatatgataca 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space:   728052
Effective search space used:   728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)