BAC Information

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BAC

Clone NameMSMg01-158H03
Chromosome19 (Build37)
Map Location 18,259,374 - 18,456,835
singlet/doubletdoublet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158H03.T7 (MSMg01no158_h03.b1)MSMg01-158H03.TJ (MSMg01no158_h03.g1)
ACCAG358656AG358657
length744734
length of high quality
(start - end)
164 (45 - 208)413 (126 - 538)
definitionCHROMAT_FILE: MSMg01no158_h03.b1 PHD_FILE: MSMg01no158_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:58 2005CHROMAT_FILE: MSMg01no158_h03.g1 PHD_FILE: MSMg01no158_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,456,676 - 18,456,835)(18,259,374 - 18,259,786)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCAACCCCCCCAGGACTGACATGCAATTCAGTTTTTCCCACAGG
GAATGCAGCCTATGACAATGAATCATAGATGACCAGACAATTTCTCAGAG
AATACAACCTTCTATAGAACCAAATTTCTTTTTATTCCAAATGGAAGGTG
AACTGTTCACGATAGAATATGTGAGTTTTTAAATTTTTTAAGCTCTTAAA
AATATACTTGACTTACTGCAGACCACTGAGGATAAAAATCTACCAAAGCT
TCCTGAATCTCTCCATGCCAGAATAAACAATACTTTAAATGATTACTATA
TCAAAAATGATTTTCTTTGTCCCCCCCCCCCCCTATAGCACACAGAATTT
GATTCTGCTTCTTTGCCCCCCCCAAAAAATAATGCGAGCCGTAGAGTTCA
CCCTGACCCCTTGACCACGGCCTAGGAACCTCACCCCCATAACCTCCTAC
CCCCCCTTCCCCTTTGCCCCCTATCCAATGATCCTGCCATCCCTCGCCTG
AACCGCTCCACCACCCTCCCCAGGCCCCTCCCTATCCCTCCCCCCCCGAT
TGCCATCACCCCCCTGCCCCCCCTTTCACCCCTCCCCATACCCCCTCCTC
CTGTCCCCCCCTCATCCCCCCCCCTTTACCCCCCCCCCTGCCCCACTACT
CGCCATCCCCCTCCTTCCTCCCCCACAATTCTCACCCCCCCTCT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAATCAGTTTAAATGCTTGTTGGAG
AAGAAATTCTTGCTATATATTGCCTTGGTTATGAGTACAGAAATTCCAGC
ATAAACCAAATTAGGACTGATGATCTGGGAATGCTCATGGGTTGTTCCAG
AGCACTAAGAATTATTTATTTACTTTAAATTTATCACCATAAAGGTGAGA
ATTTGGGTCATGGGTTGATTGGGTGGGAAAGAAGCAGAAGAGTTTGTTTA
AGGAAAGCCATCTTTCCAGTTACGGCTAGTTTGGTTGTTGCCTGGTGATA
ATTTGGATTGGTCAAACAGAACATACATGTGAGGTTATGTTCTAGAGTTC
TGTGTTTTTCTCTGACCACCCAAAGGGAAAATTTCAGTATCCTCAGTAAG
GCTCAGGCTGGATGCTAGGGACATCCTCATCTGGCTCAGAATTTGTAATG
ATAGCCTGCTTAGCCACAATTCAGGAGTTTGGAGGTATGGACAACAAAAC
TCAAAACAGGCAGAAGTAAGAGGCCCAACTCAGAAGTGAAGTCTAAGATA
GGCTGATAACAGAGGTTTGGTCACCATGCCAGGCTCTGACAAAATCAAAG
GGGCTCCTGGGTCTTTCTTCCAGGTTCCCTTCTACATGCTGAGCCTGATT
CTTCTAATATCTCGATAGAACACAGCCATTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_h03.b1 MSMg01no158_h03.b1 CHROMAT_FILE:
MSMg01no158_h03.b1 PHD_FILE: MSMg01no158_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:58 2005
         (164 letters)



>mm_chr19_18456472_18457035
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccaacccccccaggactgacatgcaattcagtttttcccacagggaatgcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattctcccaacccccccaggactgacatgcaattcagtttttcccacagggaatgcag 305

                                                                       
Query: 65  cctatgacaatgaatcatagatgaccagacaatttctcagagaatacaaccttctataga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctatgacaatgaatcatagatgaccagacaatttctcagagaatacaaccttctataga 245

                                                   
Query: 125 accaaatttctttttattccaaatggaaggtgaactgttc 164
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 accaaatttctttttattccaaatggaaggtgaactgttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no158_h03.g1 MSMg01no158_h03.g1 CHROMAT_FILE:
MSMg01no158_h03.g1 PHD_FILE: MSMg01no158_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:58 2005
         (413 letters)



>mm_chr19_18259174_18259986
          Length = 813

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttatgagtacagaaattccagcataaaccaaattaggactgatgatctgggaatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttatgagtacagaaattccagcataaaccaaattaggactgatgatctgggaatgct 260

                                                                       
Query: 61  catgggttgttccagagcactaagaattatttatttactttaaatttatcaccataaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 catgggttgttccagagcactaagaattatttatttactttaaatttatcaccataaaga 320

                                                                       
Query: 121 tgagaatttgggtcatgggttgattgggtgggaaagaagcagaagagtttgtttaaggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tgagaatttgggtcatgggttgattgggtgggaaagaagcagaagagtttgtctaaggaa 380

                                                                       
Query: 181 agccatctttccagttacggctagtttggttgttgcctggtgataatttggattggtcaa 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 agccatctttccagttacggctagcttggttgttgcctggtgataatttggattggtcaa 440

                                                                       
Query: 241 acagaacatacatgtgaggttatgttctagagttctgtgtttttctctgaccacccaaag 300
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct: 441 acagaacatacatgtgaggttatgttttagagtcctgtgtttttctctgaccatccaaag 500

                                                                       
Query: 301 ggaaaatttcagtatcctcagtaaggctcaggctggatgctagggacatcctcatctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaaatttcagtatcctcagtaaggctcaggctggatgctagggacatcctcatctggc 560

                                                                
Query: 361 tcagaatttgtaatgatagcctgcttagccacaattcaggagtttggaggtat 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagaatttgtaatgatagcctgcttagccacaattcaggagtttggaggtat 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)