Query= MSMg01no159_l04.b1 MSMg01no159_l04.b1 CHROMAT_FILE:
MSMg01no159_l04.b1 PHD_FILE: MSMg01no159_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:28 2005
(681 letters)
>mm_chr19_14888140_14889219
Length = 1080
Score = 1160 bits (600), Expect = 0.0
Identities = 658/678 (97%), Gaps = 3/678 (0%)
Strand = Plus / Minus
Query: 5 gaattcccttctgttttcaagcaacaaagacaataactttgaaatgactaactcactttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 gaattcccttctgttttcaagcaacaaagacaataactttgaaatgactaactcactttt 821
Query: 65 cgttcctttttcttcatcaacctttttccacctttaaagccagtctctctggctcagacc 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cgttcctttttcttcattaacctttttccacctttaaagccagtctctctggctcagacc 761
Query: 125 attgaagcttcttata-tttataggcaggctgccattcacttcatacatttctaacaaaa 183
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 760 attgaagcttcttatattttataggcaggctgccactcacttcatacatttctaacaaaa 701
Query: 184 gccaatctgatgttttaaattctgttgttcatgtttgtttttagcatcctcttggctggt 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 700 gccaatctgatgttttaaattctgttgttcacgtttgtttttagcatcctcttggctggt 641
Query: 244 cctttctgacttatatatgcggcacagagcgattgcaaatgggatatcacatcctgcgtc 303
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cctttctgacctatatatgctgcacagagcgattgcaaatgggatatcacatcctgcgtc 581
Query: 304 atgactttaattgacaccaacagaatcccttttctgtgcttgggaaacctagaaataagc 363
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 580 atgactttaattgacaccagcagaatcccttttctttgcttgggaaacctagaaataagt 521
Query: 364 agcacgctcctctggcttcttcctccactgtgggtagtgtttgaaaatactgagagtgca 423
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 520 ggcacactcctctggcttcttcctccactgtgggtagcatttgaaaacactgagagtgca 461
Query: 424 gaaggtgtgcgttcagttcctccgaagagttctaattaaagagaaagccaccagctgtgc 483
||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaaggtg--cattcatttcctcctaagagttctaattaaagagaaagccaccagctgtgc 403
Query: 484 agtacagggacagttcctctgtgtcactgctaaatcccttttccatcttttttcttagtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agtacagggacagttcctctgtgtcactgctaaatcccttttccatcttttttcttagtc 343
Query: 544 aagtttttcaagatgccttaatcattatacctttgatttgaacccattactcttcttcca 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 342 aagtttttcaagatgccttaatcattatacctttgatttgaacccaatactcttcttcca 283
Query: 604 tggcttggaccccatgtttaagtgctctagctacataacaccatagattagttactggaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tggcttggaccccatgtttaagtgctctagctacataacaccatagattagttactggaa 223
Query: 664 acacagatggtcagagac 681
||||||||||||||||||
Sbjct: 222 acacagatggtcagagac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_l04.g1 MSMg01no159_l04.g1 CHROMAT_FILE:
MSMg01no159_l04.g1 PHD_FILE: MSMg01no159_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:28 2005
(591 letters)
>mm_chr19_14772664_14773654
Length = 991
Score = 1089 bits (563), Expect = 0.0
Identities = 584/591 (98%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcctcgaactcaaaaattcgtctgcctctgcctcctgagtgc 60
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcgaactcagaaattcgtctgcttctgcctcctgagtgc 260
Query: 61 tgggattaaaggtgtgcgccaccacacctggctaaattcttgacaattgaaaatttcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgcgccaccacacctggctaaattcttgacaattgaaaatttcaaa 320
Query: 121 aggaaaaggaacaataaaagaattgggcaccaagacagacagctcatcagtaggaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaaggaacaataaaagaattgggcaccaagacagacagctcatcagtaggaagtgg 380
Query: 181 atccagcttacaacaagaccacagagatgttttcattgcacggaactgtgggagacacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccagcttacaacaagaccacagagatgttttcattgcacggaactgtgggagacacca 440
Query: 241 ttccttaccagtgttctgcatctttctggaaaagggctattcagcaatgggggaagaaca 300
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 441 ttccttaccagtgttctgcatctttctggaagagggcgattcagcaatgggggaagaaca 500
Query: 301 agacataagtgaattggattaactgagaagtaggaaaaacccttcttaaaaccctgatag 360
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 501 agacataagtgaattggattaactgagaagtaggaaaaacccttctcaagaccctgatag 560
Query: 361 gaagagaatgatcatatgtggcatctaaagcaggtcttgctgaggcattcaaacaagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagagaatgatcatatgtggcatctaaagcaggtcttgctgaggcattcaaacaagcaa 620
Query: 421 acaaacaacgtcaaattaaacaattaacaagcaaacaatgattagataatttctcctgaa 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaacaacatcaaattaaacaattaacaagcaaacaatgattagataatttctcctgaa 680
Query: 481 atttctttagcagctatgtgctgctgggtatctggtagcaggaaattgctggcaaggttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttctttagcagctatgtgctgctgggtatctggtagcaggaaattgctggcaaggttc 740
Query: 541 tgagtggtgaggatgctgtatcatttgttttaagttgttatcaacaatttt 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagtggtgaggatgctgtatcatttgttttaagttgttatcaacaatttt 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
