Query= MSMg01no159_o21.b1 MSMg01no159_o21.b1 CHROMAT_FILE:
MSMg01no159_o21.b1 PHD_FILE: MSMg01no159_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:45 2005
(322 letters)
>mm_chr19_15778887_15779608
Length = 722
Score = 609 bits (315), Expect = e-179
Identities = 318/319 (99%)
Strand = Plus / Minus
Query: 4 ggaattcctattctctctggggcctgtctcctcctatccttccataagagtccccaagct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggaattcctattctctctggggcctgtctcctcctatccttccataagagtccccaagct 541
Query: 64 ccatccaatatttggctgctcccttctctcttaatcacatgtacccatttgtgtcactgc 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 540 ccatccaatatttggctgctcccttctctcttaatcacgtgtacccatttgtgtcactgc 481
Query: 124 caaatgaaggttggcttgcatctcttcccactggctgctgctgggaatgtaagggtgaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caaatgaaggttggcttgcatctcttcccactggctgctgctgggaatgtaagggtgaaa 421
Query: 184 gatttctacagagaagatcaagaacaatgcatgctttaaaatatgtagtcagccatgctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gatttctacagagaagatcaagaacaatgcatgctttaaaatatgtagtcagccatgctg 361
Query: 244 aaattaatacatatttaattaatctaaagagtgtgcttgatattttatttagcagtttaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaattaatacatatttaattaatctaaagagtgtgcttgatattttatttagcagtttaa 301
Query: 304 agtacttttaggtatgtaa 322
|||||||||||||||||||
Sbjct: 300 agtacttttaggtatgtaa 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_o21.g1 MSMg01no159_o21.g1 CHROMAT_FILE:
MSMg01no159_o21.g1 PHD_FILE: MSMg01no159_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:45 2005
(298 letters)
>mm_chr19_15591016_15591714
Length = 699
Score = 571 bits (295), Expect = e-167
Identities = 298/299 (99%), Gaps = 1/299 (0%)
Strand = Plus / Plus
Query: 1 cttgccagaacgctcatcagacactcagccgaactcatctcttcctcctccgcttccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgccagaacgctcatcagacactcagccgaactcatctcttcctcctccgcttccctc 260
Query: 61 cctcagtctggttatttatagagatcacaggtgaatcggggaaattattacagcgcaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagtctggttatttatagagatcacaggtgaatcggggaaattattacagcgcaatg 320
Query: 121 actgctgaaaggctagaagctaaagaagatggattaccatggctctgacatgatttgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgctgaaaggctagaagctaaagaagatggattaccatggctctgacatgatttgtat 380
Query: 181 ggatttccaaaattaagctgttcggagtgaccaccctcctcccacccagaccttcgcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatttccaaaattaagctgttcggagtgaccaccctcctcccacccagaccttcgcatc 440
Query: 241 tgccccg-cgataaccttcatctgcacttgggagtccaggaagctgggcacgtttccca 298
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccccggcgataaccttcatctgcacttgggagtccaggaagctgggcacgtttccca 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 699
Length adjustment: 9
Effective length of query: 289
Effective length of database: 690
Effective search space: 199410
Effective search space used: 199410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
