Query= MSMg01no160_c03.b1 MSMg01no160_c03.b1 CHROMAT_FILE:
MSMg01no160_c03.b1 PHD_FILE: MSMg01no160_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:00 2005
(318 letters)
>mm_chr19_36590565_36591281
Length = 717
Score = 559 bits (289), Expect = e-164
Identities = 307/313 (98%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 6 gaattcaatctttagaaaagctaaagagaagtcagactcaagaggttggaatcccatagg 65
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcaatc-tgagaaaagctaaagagaagtcagactcaagaggttggaatcccatagg 459
Query: 66 ctacaaccagaaagtagagtggatttagggtcagtgaaggagttcagctcgcattgcagg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctacaaccagaaagtagagtggatttagggtcagtgaaggagttcagctcgcattgcagg 399
Query: 126 gctgactaaggcaaaacactagattgaatccaagcctgaggctagaaatgctctagatcc 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 398 gctgactaaggcaaaacactagattgaatccaagcctgaggctagaaatgctctagattc 339
Query: 186 gatattttagccctgtcagtacactggtttctaggttctttcagctgtgaaccaaaccac 245
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatattttagccctgtcattacactggtttctaggttctttcagctgtgaaccaaaccac 279
Query: 246 ccatgacctgcttgggcatccatgtaatctctcagagacgttccccccaagttcccgccc 305
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 278 ccatgacctgcttgggcatccatgtaatctctcagagacgttccccccaagctcccgtcc 219
Query: 306 ccaagcctattta 318
|||||||||||||
Sbjct: 218 ccaagcctattta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_c03.g1 MSMg01no160_c03.g1 CHROMAT_FILE:
MSMg01no160_c03.g1 PHD_FILE: MSMg01no160_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:00 2005
(280 letters)
>mm_chr19_36451675_36452354
Length = 680
Score = 511 bits (264), Expect = e-149
Identities = 276/280 (98%)
Strand = Plus / Plus
Query: 1 cagaaaagcatctctgctgtgcactctgggaacccagtcttttcacgccactccagagac 60
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 201 cagaaaagcatctctgctgtgcactctgggaacccagtcccttcaggccactccagagac 260
Query: 61 aagtctccattctccgaagttcccccactcacatgtcacctagacattttggattatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctccattctccgaagttcccccactcacatgtcacctagacattttggattatctg 320
Query: 121 cccacctgtccccgcgcgagactgtcctgaggtccaccagcgtttttactctgtctgcag 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 cccacctgtccccgcgcgagactgtcctgaggtccaccagcgtttctactctgtctgcag 380
Query: 181 aggagacctgccagaaaggctgcagtgctgcgtttaccgttaacttctcaggatagccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagacctgccagaaaggctgcagtgctgcgtttaccgttaacttctcaggatagccta 440
Query: 241 gcctgctcccagagacagaaaactccttccatgtgagttc 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctgctcccagagacagaaaactccttccatgtgagttc 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
