BAC Information

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BAC

Clone NameMSMg01-161C24
Chromosome19 (Build37)
Map Location 18,334,683 - 18,335,046
singlet/doubletsinglet
Overlap genenone
Upstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161C24.T7 (MSMg01no161_c24.b1)MSMg01-161C24.TJ (MSMg01no161_c24.g1)
ACCAG360655AG360656
length1,1661,167
length of high quality
(start - end)
421 (30 - 450)346 (100 - 445)
definitionCHROMAT_FILE: MSMg01no161_c24.b1 PHD_FILE: MSMg01no161_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:30 2005CHROMAT_FILE: MSMg01no161_c24.g1 PHD_FILE: MSMg01no161_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CAAGGCCCATACCAAAACACAGTAAAAGCAATATGCAGCAAGCCCGTAGT
CAATATTAAGCTAAATGGAGAAAAATTTGATGCAATTCCACTAAAATCAG
GAACTAAACAAGGCTACTCGACTCTCTTCCTACCTATTCAATATAGTACT
TGAAGTTGAAGCTAGAGCAATTAGACAGCAAAGGGATACAAATTGGAAAG
GAAGAGGTCAAAATATCACTATTTGCAGCTGGTATGATAGTGTATTTAGG
TGACCCCAAAGTTTTAATAGAGAACGGTAGCTGCATATAAGGTTAACTCA
AATCAATTAAAGGATAAATGGTCTGTGAAAGAAATTAGGGAAATGACACC
CTTCTTAATAGTCACAAATACTATAAAATGTCTTGGTGTGACTCTCACCA
TTTTTTTTTCCCCCCCCCCCTAGAAGAACTTCAAGTCCCTCAAAAAAGAA
ATACAAGAAAACCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG
CAGGTTTAATATAGTAAAAATGGCCATCTTGGCAAAAGCAATCTACAGAT
TCAATGCAATCCCTGTCAACATTCTAACTCAATTCTACATAGAGTTAGAA
AGAGTAATTCTCAAATTCATTTGAAATAACAAAAAAAAAAACCCCACAGG
ATAGTGAAAACTATTCTCAATAATAATAGAACATCTGGGGGAATCACCAT
CCCTGACATCAAGCTGTACTACAGAGCAATAGTGATAAAAACTGCATGGT
ATTGGTACAATGACAGGCAAGTAGATCAATGGAATAGACTTGAAGACCCA
GAAATGAACCCACACACCTATGGTTACTTGATCTTTGACAAAGAAGTTTA
AACTATCCAGTGGAAAAAGACAGCATTTTCAATGAATGATGCTGGTTCAA
CTGGTGGGTGAACATGAAAAAGAATGCAAATTGATCCATTCTTATTTCCC
TGAACAAAGCTCAAGTCCAAGTGGAATCAAGAACCTCCCAAAAAAATTCA
GAAACCCTGAAATCTAGTAAAAAAAAAAGGGTGGGAAAAAGCTGGAACAC
CTGGGGCACAGGGAAAATTTTCTTGAAAAAAAAAACATAAGGGTTATATT
CTTAAAACAAAAAAAG
NNNTTATCATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATATTTTTCTACTTCATAGGCCTTACTTTGT
GGCTTCTAATGTGACTAATTTTAGGCAAGTTTCTTTGTGCTGCTCAAAAT
AATGTGTATTCCTTATCAGTTAGATGGGATATAATTTCCTTTATTTATAA
TTGATCCTGACATAATTAGCTCTGAAGTTTCTTTGATATTTTACACACAC
ACACACACACACACACACACACATTCTTATTGGGAATTTGCTTGTCTGTA
TGTTGGATATGATGAATTCCTTTCCATCTCACCTTTTTTGTCTTCTTTTA
AAAAATATTTCTGTCATAAAATGGATTCTTTGCTTTGTTTTCATGTTTTA
GGCTTTCTATCTTCCTTGTATGCAGCAACCGTTAAATTAATCTTTTTTTT
TTTCCCACGCCCCCAAAATGNTTTGTATTAATAAAAAAAAGGGGTAAAGA
GTTNTTTCTANATCTATTTTAAGAGGTGATAANTTTTCTGAGTTTAGTAA
TGTTGGANAANAGTTATTTANATTNTTGGNTTAGAAATATATTTTTNTCT
ACTTTCTTAGCTCCTAGGCTCCTTGATGAGAGATCTGATGGTCATTCCTA
TATCTTTGCCTTTGCAAATACGTTGGTTTCTATTTTAATATTGTGTCTTT
GCTTTGCTCACTATGCTTTCTGATTTCCTCACTATGATATGCCATAAATA
TTTTTTTTCGTGCTCATACTTTTATTTTGGGCTTCTAAATGTTCCTTATG
TTTAGATGTACATTTTTCTAGGTTTGGGAGATTTTTATGCTATACACTCA
ATGAATAATTGACGATGCCTTTAATCTTTAATCTCAGCTCAAAGATTCTT
AGTTTTGGTCTCTTTAACATTTGCCAAAATTATTAAAAGGTTCAAAAGGC
CCCTTTTCAATTTTCTTTTCTTTCGCCCTAAAAAACCCTTTTGGTAAACC
TATAAAAGGGTTACCTGGGGCCAATTAATGGCCCCCTGTGGATGGTTTAT
GGTAAAAAGTCATATTCATTTTTGTGGGGGTGTTAAAAAAAAACTTTTTG
TTTTTATATTCTCGATTTATCCCATTGGTTGTGTGTAAAGAAGAACAACT
GGTGTCTTTTTCTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_c24.g1 MSMg01no161_c24.g1 CHROMAT_FILE:
MSMg01no161_c24.g1 PHD_FILE: MSMg01no161_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:31 2005
         (346 letters)



>mm_chr19_18334309_18335054
          Length = 746

 Score =  592 bits (306), Expect = e-173
 Identities = 340/364 (93%), Gaps = 20/364 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcttctaatgtgactaattttaggcaagtttctttgtgctgctcaaaataatgtgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tggcttctaatgtgactaattttaggcaagtttctttgtgctgctcaaaataatgtgtat 679

                                                                       
Query: 61  tccttatcagttagatgggatataatttcctttatttataattgatcctgacataattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tccttatcagttagatgggatataatttcctttatttataattgatcctgacataattag 619

                                                                       
Query: 121 ctctgaagtttctttgatatttt--------------------acacacacacacacaca 160
           |||||||||||||||||||||||                    |||||||||||||||||
Sbjct: 618 ctctgaagtttctttgatattttacacacacacacacacacacacacacacacacacaca 559

                                                                       
Query: 161 cacacacacacacattcttattgggaatttgcttgtctgtatgttggatatgatgaattc 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cacacacacacacattcttattgggaatttgcttgtctgtatgttggatatgatgaattc 499

                                                                       
Query: 221 ctttccatctcaccttttttgtcttcttttaaaaaatatttctgtcataaaatggattct 280
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttttccatctcaccttttttgtcttcttttaaaaaatatttctgtcataaaatggattct 439

                                                                       
Query: 281 ttgctttgttttcatgttttaggctttctatcttccttgtatgcagcaaccgttaaatta 340
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgctttgttttcatgggtgaggctttctatcttccttgtatgcagcaaccgttaaatta 379

               
Query: 341 atct 344
           ||||
Sbjct: 378 atct 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)