Query= MSMg01no164_f04.b1 MSMg01no164_f04.b1 CHROMAT_FILE:
MSMg01no164_f04.b1 PHD_FILE: MSMg01no164_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:08 2005
(266 letters)
>mm_chr19_58361111_58361776
Length = 666
Score = 451 bits (233), Expect = e-131
Identities = 254/261 (97%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagaaccatctctcaggccttctgctgtggcatagacacctgcccttgtcttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagaaccatctctcaggccttctgctgtggcatagacacctgcccttgtcttt 263
Query: 64 ctcctcagtgctgaggacaccccactcatctcttacctctgaggcccagaaagcatctga 123
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 264 ctcctcagtgctgaggacaccccactcatctcttacctctgagccccacaaagcatctga 323
Query: 124 tgacccaccaatgaactaatcaccagccacagctcacaaaacagccagtctaacgaacaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacccaccaatgaactaatcaccagccacagctcacaaaacagccagtctaacgaacaa 383
Query: 184 gagggaaatgtcacagccacaggccttatttgtagctaaatgtggttcagtgtgaagttc 243
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 384 gagggaaatgtcacagccacaggccttatttgtagctaagtgtggttcagtttgaagttt 443
Query: 244 taattcggggg-ggtggggtg 263
||||||||||| || ||||||
Sbjct: 444 taattcgggggtgg-ggggtg 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no164_f04.g1 MSMg01no164_f04.g1 CHROMAT_FILE:
MSMg01no164_f04.g1 PHD_FILE: MSMg01no164_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:08 2005
(340 letters)
>mm_chr19_58499545_58500284
Length = 740
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%)
Strand = Plus / Minus
Query: 1 ttcgtgcgatttttaatttctttgcaaaagataggtctttttctgtgccccctcccccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttcgtgcgatttttaatttctttgcaaaagataggtctttttctgtgccccctcccccac 481
Query: 61 ccgtttctttcagcatgggagctcatatcaaatatctttaattaaaatgagttcatactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccgtttctttcagcatgggagctcatatcaaatatctttaattaaaatgagttcatactt 421
Query: 121 tggggccgggtttgaggtaatggcattctgtgcttcccctttgtgctatacatttgagca 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 420 tggggccgggtttgaggtaatggcattctgtgcttcccctttgtgctgtacatttgagca 361
Query: 181 gattctgtagctggagaatatattccaaagtcagctacatcagagctgtgggaagcatgc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 gattctgtagctggagaatatattccaaagtcagctatatcagagctgtgggaagcatgc 301
Query: 241 gtgtagtaggacttcagatgttgcataagaaatcacaggaagtttaattgggggaaggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtgtagtaggacttcagatgttgcataagaaatcacaggaagtttaattgggggaaggta 241
Query: 301 aagaaaatcaataaaaataaaagtgaaaggaagttattga 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aagaaaatcaataaaaataaaagtgaaaggaagttattga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
