BAC Information

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BAC

Clone NameMSMg01-166P24
Chromosome19 (Build37)
Map Location 13,987,574 - 13,987,848
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504
Downstream geneOlfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P24.T7 (MSMg01no166_p24.b1)MSMg01-166P24.TJ (MSMg01no166_p24.g1)
ACCAG364647AG364648
length825760
length of high quality
(start - end)		274 (68 - 341)369 (77 - 445)
definitionCHROMAT_FILE: MSMg01no166_p24.b1 PHD_FILE: MSMg01no166_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:39 2005CHROMAT_FILE: MSMg01no166_p24.g1 PHD_FILE: MSMg01no166_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATAATTGCGGCGCTATACGACTCCTATAGTTTCTGATGCGCGGAATTC
TAATAAAAATTGCAAGGACTTTTAGGGCCAAAAAGCCACATGAGGACTAA
GAAATTCTATATTACAAAAAAAGACATTCACTTAAAATCCCCAGATCTGA
GTTACAGTTCCACTATTATCCCTGACTAATTTCAGCCAGAATATGATGGT
CAGTGACAAAAAACAAGTGTACTACAGCAGGAGCTGCTATTGAGTTCTGA
GTGTTAACAGCTTAGGAGTAGTCATAAACCCCAAAATGTTTTCTTTTATC
CCTTAGGATGTATAGAGAAGATGTGATAATGAGTCTTGTCTCTTCGGCAA
TGTGTTCTCTCTATACCCCCTCCTTTTCTTTTGTACCCTCTGTTATCTTT
GGAGTTTTTCACCCCCCCTCCCCAATCCTTTTTTCCCCTGTTTTTTTCCT
CACCCATTCCCCTCTCCCCCTTATTTTCCCCCCCCCTTTTATTTTCCTTT
TACTCTTTTTTTCCCCCCCCCCCCCTTTTTTTTTTCCCTACCTATCAACT
TTCCCCCTTTTTCCACCCTCCTTTTTTCTTTTCTCCCCCCCTTTTATTTT
TCCCCCCCCCTTATTCCCCTCTCTCCCTTTTTCCCCCCTTTACCCCCTTT
TTTACCTCCCCTTTTATCCCCCCTTTTTTCCCCCCACTCCTTCCTCCTTT
TTTTTTCCCCCCCCTCTTCCCCCCTTTTCTTTTACCCCACCTTTTTTTTT
TTCACCTTTTACTATCTCTTCCCCTCTTTTTCCCTCCCCCTCTCTTTTTT
CCTCTCCACCGCTATATTCCCCCCN

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACGTACCCCATTCATAATGGATA
TGTGCAAAAACCCAAATGAGTAGAAATGCTAGTAGGTATTTGCAGGACCG
AAGGGGAAAACACTTATTAACTTCTGGTGGAGTACAAACTGGGGTAACCA
CTATGGAAATCAGTATGGAAGTTCCACAAAAGGTTTGAAATCTATTATAA
ATTCATCATTATGGATCTCTGCATAGGCTGAGTTCCTTGATTATTATGAA
TAGAGCAGCAGTAAACAGGGGTGCATTTGCACATCTATTGTAGGACACAT
TGCTGTATAGATGTATGCCCAATAGTAGTATAGTTGGGTCATGTGGTATA
TAGATTGCCCACTATTGCCCCCCCCATCCTACCAATCCATGAGTATGGGG
GGTCTTTTTTTTTATCTGATCCTTCTTAAACTCTCTACCTTTATCTACCC
TTTCTCCTCCTTATCTTTTCTCTTCTCCCTTTTCCTCTTTTATTGCGATT
TTCTTTATTCCCACTCTTTCTACTCCATCCCCCACTACTATCCTTCTTAG
TGTCTTGTTTCCTTCCCCCTCTATTTTCTCCTCTCTTTCCCCCTCTTCAC
CCTTATCATTTTTTCCTCTTGTCTTATCTTCATTTCTATTATTAGCGTTA
CCTTCATCTTCCACTATCATCCTATCCTCTTGTTCCTTATCGCACACCTT
TTCCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p24.b1 MSMg01no166_p24.b1 CHROMAT_FILE:
MSMg01no166_p24.b1 PHD_FILE: MSMg01no166_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:39 2005
         (274 letters)



>mm_chr19_13987374_13988048
          Length = 675

 Score =  524 bits (271), Expect = e-153
 Identities = 274/275 (99%), Gaps = 1/275 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttagggccaaaaagccacatgaggactaagaaattctatattacaaaaaaagacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttagggccaaaaagccacatgaggactaagaaattctatattacaaaaaaagacat 260

                                                                       
Query: 61  tcacttaaaatccccagatctgagttacagttccactattatccctgactaatttcagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacttaaaatccccagatctgagttacagttccactattatccctgactaatttcagcc 320

                                                                       
Query: 121 agaatatgatggtcagtgacaaaaaacaagtgtactacagcaggagctgctattgagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatatgatggtcagtgacaaaaaacaagtgtactacagcaggagctgctattgagttc 380

                                                                       
Query: 181 tgagtgttaacagcttaggagtagtcataaa-ccccaaaatgttttcttttatcccttag 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgagtgttaacagcttaggagtagtcataaaaccccaaaatgttttcttttatcccttag 440

                                              
Query: 240 gatgtatagagaagatgtgataatgagtcttgtct 274
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgtatagagaagatgtgataatgagtcttgtct 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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