Query= MSMg01no168_l08.b1 MSMg01no168_l08.b1 CHROMAT_FILE:
MSMg01no168_l08.b1 PHD_FILE: MSMg01no168_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:08 2005
(315 letters)
>mm_chr19_30620146_30620860
Length = 715
Score = 574 bits (297), Expect = e-168
Identities = 306/309 (99%)
Strand = Plus / Plus
Query: 5 gaattcaattcagggatttttttttttaataaagccattctcattccaatcaatggagta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattcggggatttttttttttaataaagccattctcattccaatcaatggagta 264
Query: 65 caggtgaagcaaaaaatgaaataatttcttggcaagagaagtgttacattctagaattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggtgaagcaaaaaatgaaataatttcttggcaagagaagtgttacattctagaattta 324
Query: 125 tgattgtttagtaattattttttaaatcaaagtgattgaaacaattcttcagcatgtcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattgtttagtaattattttttaaatcaaagtgattgaaacaattcttcagcatgtcag 384
Query: 185 aggatctaaaatattcagaattaattatttggcttaagttggcaggcttccttctgcata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggatctaaaatattcagaattaattatttggcttaagttggcaggcttccttctgcata 444
Query: 245 atctcttctgaattctgcccatcatctgtattcacttgcttgggcattccctcccttcca 304
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 445 atctcttctgaattctgcccatcatctggaatcacttgcttgggcattccctcccttcca 504
Query: 305 ataactgtt 313
|||||||||
Sbjct: 505 ataactgtt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_l08.g1 MSMg01no168_l08.g1 CHROMAT_FILE:
MSMg01no168_l08.g1 PHD_FILE: MSMg01no168_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:08 2005
(243 letters)
>mm_chr19_30659184_30659827
Length = 644
Score = 397 bits (205), Expect = e-115
Identities = 238/263 (90%), Gaps = 22/263 (8%)
Strand = Plus / Minus
Query: 1 aacttatttatgcagatgatcacagattcagaaagcaggcagaaaagtaggtcacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacttatttatgcagatgatcacagattcagaaagcaggcagaaaagtaggtcacaaaaa 270
Query: 61 tgcaaccaactcaatggccaattttaatcttgccatcactgtc----------------- 103
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 269 tgcaaccaactcaatgaccaattttaatcttgccatcactgtctttgtgtgtgtatgtgt 210
Query: 104 -----tctctgtgtgtgtgtgtgtggtgtgataaagagagattaaatttccttgagattt 158
| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtgtgtgtgtgtgtgtgtgtgtgtggtgtgataaagagagattaaatttccttgagattt 150
Query: 159 attggactagtcatttggctgaaaatacagtatgagaaatgataaccatatgaaaagttt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 attggactagtcatttggctgaaaatacagtatgagaaatgataaccatatgaaaagttt 90
Query: 219 tagggtcagatttccttacaagc 241
|||||||||||||||||||||||
Sbjct: 89 tagggtcagatttccttacaagc 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
