Query= MSMg01no170_l12.b1 MSMg01no170_l12.b1 CHROMAT_FILE:
MSMg01no170_l12.b1 PHD_FILE: MSMg01no170_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:45 2005
(313 letters)
>mm_chr19_42891387_42892102
Length = 716
Score = 543 bits (281), Expect = e-159
Identities = 301/309 (97%), Gaps = 3/309 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgctaagcctccaacttgctctgtcggcagacccactgattttccatttgta 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcagtgctaagcctccaacttgctctgtcggcagacccactgattttccacttgta 264
Query: 65 gagaagacacttttcagagtgccttacactcccttccgcctgccatccatttgatgtcct 124
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaagaaacttttcaaagtgccttacactcccttccgcctgccatccatttgatgtcct 324
Query: 125 c---tctgaaggagctcttcgctttcactctaaaacagcgcatcactgccaagtcttcat 181
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 cctctctgaaggagctcttcgctttcactctgaaacagcgcatcactgccaagtcttcat 384
Query: 182 tttccatcccaagcccagttcaagggctatgcgtcctgggaaggagtgtggcccagacag 241
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tttccatcccaagcccagttcaagggctatgtgtcctgggaaggagtgtggcccagacag 444
Query: 242 tggctatgggttttctcacacactgaaggctactatctggcttttactcttaaaagtgtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggctatgggttttctcacacactgaaggctactatctggcttttactcttaaaagtgtc 504
Query: 302 agctcacca 310
|||||||||
Sbjct: 505 agctcacca 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 716
Length adjustment: 9
Effective length of query: 304
Effective length of database: 707
Effective search space: 214928
Effective search space used: 214928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no170_l12.g1 MSMg01no170_l12.g1 CHROMAT_FILE:
MSMg01no170_l12.g1 PHD_FILE: MSMg01no170_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:45 2005
(286 letters)
>mm_chr19_43038192_43038877
Length = 686
Score = 549 bits (284), Expect = e-161
Identities = 284/284 (100%)
Strand = Plus / Minus
Query: 1 ttatgtataatggccacataatactccttcaggaaaaaatacttttaaaaatgcaaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttatgtataatggccacataatactccttcaggaaaaaatacttttaaaaatgcaaatga 425
Query: 61 cataaaggtgattttgagtattaaaggacacaaaatgctaggatttcagacagaaagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cataaaggtgattttgagtattaaaggacacaaaatgctaggatttcagacagaaagaca 365
Query: 121 ctaataatgcccagcaagactcggatgttcaaaaagaacaaagagcaccagaaaccacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctaataatgcccagcaagactcggatgttcaaaaagaacaaagagcaccagaaaccacag 305
Query: 181 agttttagataaataaaaaacactattttcactctttattttttttaaaaccagacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agttttagataaataaaaaacactattttcactctttattttttttaaaaccagacaaat 245
Query: 241 gctaacttgtgaattatatggggtttactacatctgtggctgta 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctaacttgtgaattatatggggtttactacatctgtggctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
