BAC Information

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BAC

Clone NameMSMg01-170L20
Chromosome19 (Build37)
Map Location 54,112,498 - 54,112,784
singlet/doubletsinglet
Overlap genenone
Upstream geneXpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2
Downstream geneAdra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L20.T7 (MSMg01no170_l20.b1)MSMg01-170L20.TJ (MSMg01no170_l20.g1)
ACCAG367211AG367212
length790716
length of high quality
(start - end)
225 (132 - 356)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no170_l20.b1 PHD_FILE: MSMg01no170_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:46 2005CHROMAT_FILE: MSMg01no170_l20.g1 PHD_FILE: MSMg01no170_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCGATATAACATTTTCTTTGACCTATATATCCATTTCTTCTAT
AGTATCTTCACTGCCTGAGAGTCTCTTTTGNATCTTTTGTATTCTTGTTT
TGCCTCTGTAGCTTGTTTGAATTGCTAAATTTTTCATTCCAGATGGGATC
ATCTGTTTTCTTTATTGCTTCTATTTCCATTTTTAGATCTTCAACAAATT
TGCTTCAACTCCCCCCCACCAGCTTTCTTCCAATTGTGTGCATTTTTCTG
GATTTCTTTAAGGGATTTATGGATTTATTTATTTCCTCTTTAAGGACCTT
TGNCATCTTCAAACAGTTGGCTCTNNNCCCCNNTCTCTTTTTGGTTTTTG
GNTTTTGGNNNGNNNNNGGNNAAAAAAAATNTAATTAAAAATGTGTGGGG
GGGGGGGGGTTTTTNTTTTNTTTTTTTGGTTTTTTTTTTTGTTTTTTTTT
TTTTTTTTTGTGTTGTTTGTTGGTTGTTGGTTTTTGGTTTTGTTTGGGGT
TTTTGGGTTTTTTTTTTTTGTTTTTTGTTGTGTTTTTTGTTTTTGTTGTT
TTGTTGTTTTGGGTTTTGTTTTTTTGTTGTGGGGGATNGTTGGGTGTTGT
TGGTTTTTTTTTGTTTTGGTTTTTTTTGTNTGTGGTTTTTTTTTTTTTTT
ATTTTTNGTTTTGTTGGTTTTTTTATTNGTTTTTTGTTTTGTTTTNTTNG
TTTTTTGGTGGTTTTTGTTTTGTTTTTGTGNTTTGTTTTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTAAGTGTGAGCAACTGAAA
AACATGCAGAAACTCCATTCTTCTTTGCAGAGAAAAAAAATGTGACAATT
TATGGATTCTTTTCTTTTGGTGTTATGCCTAAAACTCTATTGCCAGACCC
AGTTTCTCTAGTCACTTTCTGACTGTCTTTCAATGTTGTTAGAGCTGGGT
CTCTTGCACTCCACACAGAGCTAGGAACTTAAGACTTTTACGTCTTATGT
TTGTGTATATAGTTCATTCTAGATTTTAGGACTTGAATTTGTTAGATACA
CAGGCAGATATTTTTTTTTTGACCCGCCCCACCCATAGACAGACAAGACA
GACGGACAGATGGAAAGACAGATGATATAGACAGACATATTCCCATACCC
CTGGAAAGGCCATTATTACTGTCTTTGCTCCTTTAGGAAATGGGCTGTTG
AAAGTTACCTCGAAGATAAAAAATTTTATCAAGTGATTTTGTTTTGTGTT
GATATGATCATGTGACATTTTTCCCCTTAACCTGTTGGTGTAATACATAA
TGTTGAAACAGCCTTCTTTATTTGGCATAAACAATGCTTGGTCACGTATA
ACTCTTTTATACATTCTCAGATAAAATTTGCTAGTATTTTAATGAGGATC
TTTGCATTAATGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l20.g1 MSMg01no170_l20.g1 CHROMAT_FILE:
MSMg01no170_l20.g1 PHD_FILE: MSMg01no170_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:47 2005
         (288 letters)



>mm_chr19_54112298_54112988
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 284/287 (98%), Gaps = 3/287 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtaagtgtgagcaactgaaaaacatgcagaaactccattcttctttgcagag---a 57
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 487 agcagtaagtgtgagcaactgaaaaacatgcagaaactccattcttctttgcagagaaaa 428

                                                                       
Query: 58  aaaaaaatgtgacaatttatggattcttttcttttggtgttatgcctaaaactctattgc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaaaaaatgtgacaatttatggattcttttcttttggtgttatgcctaaaactctattgc 368

                                                                       
Query: 118 cagacccagtttctctagtcactttctgactgtctttcaatgttgttagagctgggtctc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagacccagtttctctagtcactttctgactgtctttcaatgttgttagagctgggtctc 308

                                                                       
Query: 178 ttgcactccacacagagctaggaacttaagacttttacgtcttatgtttgtgtatatagt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgcactccacacagagctaggaacttaagacttttacgtcttatgtttgtgtatatagt 248

                                                          
Query: 238 tcattctagattttaggacttgaatttgttagatacacaggcagata 284
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcattctagattttaggacttgaatttgttagatacacaggcagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space:   190278
Effective search space used:   190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)