BAC Information

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BAC

Clone NameMSMg01-171J09
Chromosome19 (Build37)
Map Location 11,620,444 - 11,620,753
singlet/doubletsinglet
Overlap geneMs4a4d
Upstream gene5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b
Downstream geneLOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171J09.T7 (MSMg01no171_j09.b1)MSMg01-171J09.TJ (MSMg01no171_j09.g1)
ACCAG367778AG367779
length805724
length of high quality
(start - end)
283 (20 - 302)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no171_j09.b1 PHD_FILE: MSMg01no171_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:50 2005CHROMAT_FILE: MSMg01no171_j09.g1 PHD_FILE: MSMg01no171_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACTCCTATAGGGCGAGGATCCGCGGAATTCCTTATAACCCCATGGGACA
AGGAATAGTTGAATGTGCTCATCGCACTTTAATAAATTGGCTTTTAAAAA
CAAAACAGGGGCAGTTATATTCCCCAAGGCCACCAAATACACATCTTGCT
TTTGCTTTATTTGTTCAAATTTTTTTGCAAACTGATGTTAAAGGTCAGTC
TGCAGTGGATTGCCACTGGCATCCAGTTATTTCTAGTTCTTATGCCATGG
TAAAGTGGCGGGAGTAATGAATGGAAGGGTCCAGACCTGGTCCTAATCTG
TTATTTTTTTCTCAGTCTGGTTTTTTTTGAAAGAAAGGTTTTANATGACT
CCAAAAACAAAAACCCNATATATATTATTTAAAAAAATTTGTTTTGGCCC
CCCCCCATAAAAAAACTAATAAAAACCTTTTTTTCGTGGTTTTTTTTTAT
TAACCCACCACTCTACTCTCACTCTAAAAAATTCCCCCCTTCCATCTTTT
TATTATTTAAATTCCCCCTCCTTTTTATATTACCCCCCCCCTCCTTCCCC
ATTTTATCCTTTTTTTCCCAATATAATCCTCCCTTTTTCACAACCCCATC
CATTAACCCTTTTCTCATTTTTTTTTTTTTTTTTTTCCTCCCCCTTTATA
TCACATATTTTATAACACATTTCTTTTTATTTTTTCCCCATTTTTTCACA
AACCCCTTTCTTTTTTTTATACTTCTTTAATCATCCTCTTCTTTATCCTC
CTCCCTATTTCCTCTCCACCCCTTTTTTCCTTCCCCATCTTTTTTTACAC
CCCTG
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGGCAAAAGTTCATTGGGC
ACAATTGCTACCAAGCATCTTTCTGATCTTCACACTGCTAAGTGTTTTCT
CATTGCCCTCCATTAATGAATATCTATATCAGAGGCTTCAGCTCTTGGCC
TTTAAGTCCTACTTCAGGTCACAGTTCATCCCAAGAGCAGACTAATCATG
TCAGGCTGAATGTTCAGCCCCATCATTGGAATTTCCACCAAATTCTGCAT
GGAGCAGATACTGTCTGAACTCATGGATTATGAAAATAATATGTAGGTGA
CAAAGATTATTATTATTGACGCCCCCCCCCCATATGTGAAAAGATTGGTC
AATAATATAAATTATTTCACTTTCAAGAGTTTGGTACCCTGAGTATAAAA
AAATTGAAACAACTTCACACAGTGCTCAACTGAAGCCTTCTTAAAGCCTT
TATCTTTTCTTTTAATTTTTGTTTAAAACTATTATTTATTTATTTATTAT
TTTAAATTTTAATTAATTTAAAATTTTATTATTTTAAAATTTATTTTTGA
TATTATACTTGAGTAGTATATTTATATCATTTCCATCTCACCCTATCTTC
TCTCGAACTTTTCTCATGATCTCCTACTTTCTTTATATTCATGACTCTTT
CCCTTTAATTGTTATTGTTAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_j09.g1 MSMg01no171_j09.g1 CHROMAT_FILE:
MSMg01no171_j09.g1 PHD_FILE: MSMg01no171_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:51 2005
         (286 letters)



>mm_chr19_11620125_11620807
          Length = 683

 Score =  205 bits (106), Expect = 2e-57
 Identities = 244/318 (76%), Gaps = 50/318 (15%)
 Strand = Plus / Minus

                                                                       
Query: 7   gcaaaagttcattgggcacaattgctaccaagcatctttctgatcttcacactgctaagt 66
           |||| ||| ||||||||| |||||||| |||||||||||||||||||  ||||||| || 
Sbjct: 629 gcaagagtgcattgggcataattgctatcaagcatctttctgatctt--cactgctgaga 572

                                                                       
Query: 67  gttttctcattgccctccattaatgaatatctatatcagaggcttcagc----------- 115
           || |||||  || | |||||| ||||| ||||||| |||||||||||||           
Sbjct: 571 gtcttctcggtgtcttccattgatgaacatctataccagaggcttcagctatctatacca 512

                                                                       
Query: 116 -----tcttg-----------------gcc-----t---ttaagtcctacttcaggtcac 145
                |||||                 |||     |   |||||||||||||||||||||
Sbjct: 511 gatgttcttgtgtgtcttctaaatgaagccagtgatgcattaagtcctacttcaggtcac 452

                                                                       
Query: 146 agttcatcccaagagcagactaatcatgtcaggctgaatgttcagc-cccatcattggaa 204
           ||| ||||||||||||||||||||||| | |||    || ||||||  |||||||| |||
Sbjct: 451 agtccatcccaagagcagactaatcatattagg----atattcagcatccatcatttgaa 396

                                                                       
Query: 205 tttccaccaaattctgcatggagcagatactgtctgaactcatggattatgaaaataata 264
           ||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||
Sbjct: 395 tttccaccaaattctgcatggagcagatactgtcttaactcatggatttttagaataata 336

                             
Query: 265 tgtaggtgacaaagatta 282
           |||||||||||  |||||
Sbjct: 335 tgtaggtgaca--gatta 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 683
Length adjustment: 9
Effective length of query: 277
Effective length of database: 674
Effective search space:   186698
Effective search space used:   186698
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)