BAC Information

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BAC

Clone NameMSMg01-172M02
Chromosome19 (Build37)
Map Location 45,115,554 - 45,286,798
singlet/doubletdoublet
Overlap geneEG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
Upstream geneErlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7
Downstream geneLbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M02.T7 (MSMg01no172_m02.b1)MSMg01-172M02.TJ (MSMg01no172_m02.g1)
ACCAG368570AG368571
length750715
length of high quality
(start - end)		306 (45 - 350)484 (75 - 558)
definitionCHROMAT_FILE: MSMg01no172_m02.b1 PHD_FILE: MSMg01no172_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:17 2005CHROMAT_FILE: MSMg01no172_m02.g1 PHD_FILE: MSMg01no172_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,286,496 - 45,286,798)(45,115,554 - 45,116,037)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCTATCCTCCATAGGATGCAGAAAGCATCTAAGATGCTATGCT
ACTGGCCAGTTCTGCATCAGGGATGGAAAGGGGTTGTGGAGAAGGAAGAA
ACTGGGGTGCCATTCCAACAAAATATGGTTCACATGGCACTCATTGTGGA
AGGCTGTTCCCAGCATGCGCAGTGGAAGTGGACTGGTGTTTCCAACAGCT
GGCCATGTCTGTGTACCACACATCTCCAATAAGAAAAGGTGGAGGGCAAA
GAGGTGGTCCAAGTCTATCTGCAATTGTCTTGGTTGGTTTTATTCGATGA
CAGNGAATGTTTTTTTGCCCCCCCCCCCCCGAATAGGTTTGATTTATATA
GATTCTATGACTCCCCCCCTTTAAAAAAAACATGTGCCCTGGCGGTATTT
TCTTCTTTTTCCGTCTTTCTCCCCCCCGATAATTTTTTTGTCTACCCCCT
GCTTCTTCTATCATTTTTACTTCCTTTTTTCTACCCTTCATTCCCTCTAC
TTCCGCCCCCACACCCTTTTTTTTTCTTCCTTCCTCCCACTCTTCTTCTT
TACTTTTCTTCCTCCCCCCACTTTTTCTCTCCTTCTCCCTCCTTCTGTTC
CTTCTTTTCCTCCCTCCCTTTCCTATTTTCTATTTTTCTCTTACCCCCCC
CTCTTATGTTTCCTCATATTTTCCCTCACACTCTTCCTCCCTCCTCTTTT


ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACATGCAATCTCTGAAAATCTGCC
CTTCTGAGTGGCAGATGGTAAAAAGGAAGGTTCAAGATTCCATTGTGTGG
AGTCTGGGGCTCTCCGCTTGCAACAGAATGAGCTCCAACTCCAAAAAGCT
GAGGAGCTATCCCGATTGCATTAGATGTTCAGTGCGTAACTTAAGGGCAG
AACCAAGCTAGCACAGGGGAGTTAGACAGAGACAGCTTTTCTTTTGTGCT
GGGACAGATGGCGGGCTTTCTATCTGGAAGCATGAAAACTGGAACTTGGT
AAATTCTTGACCAGGATCTAATGCCAGAACGAGGAAGCCTCTTCCATCCC
GTAGACTCTGATTCTAAAGAGTAGAGCGGTAGGAACTACCCGGCTACCAG
AGGACAGAACCTCTAATTCAGCATGCTGCAGTTGAGAGTCCATAATAGGG
GCCAGTGAAGAGGCAGGGCAGCTGGTTCTTTAGAGAAATGAAAGGGGGAG
AGATTTGGCCAGTGCATAGAGAGGTCATGTGCGAGGCCCATAGGCACCTG
CTCTCTGAAATTAACAAGAGCGCCAGGTTTTCTATAACAGGAGGACATTT
ACCGTTTCTTCAGACAAGTCTTACTCCACACGTGTCCGACTGTCATCCCT
CTTACTTCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m02.b1 MSMg01no172_m02.b1 CHROMAT_FILE:
MSMg01no172_m02.b1 PHD_FILE: MSMg01no172_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:17 2005
         (306 letters)



>mm_chr19_45286293_45286998
          Length = 706

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgctatcctccataggatgcagaaagcatctaagatgctatgctactggcc 63
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 ggaattctttgctatcctccataggatgcagaaaacatctaagatgctatgctactggcc 447

                                                                       
Query: 64  agttctgcatcagggatggaaaggggttgtggagaaggaagaaactggggtgccattcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agttctgcatcagggatggaaaggggttgtggagaaggaagaaactggggtgccattcca 387

                                                                       
Query: 124 acaaaatatggttcacatggcactcattgtggaaggctgttcccagcatgcgcagtggaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaaatatggttcacatggcactcattgtggaaggctgttcccagcatgcgcagtggaa 327

                                                                       
Query: 184 gtggactggtgtttccaacagctggccatgtctgtgtaccacacatctccaataagaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtggactggtgtttccaacagctggccatgtctgtgtaccacacatctccaataagaaaa 267

                                                                       
Query: 244 ggtggagggcaaagaggtggtccaagtctatctgcaattgtcttggttggttttattcga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggtggagggcaaagaggtggtccaagtctatctgcaattgtcttggttggttttattcga 207

              
Query: 304 tga 306
           |||
Sbjct: 206 tga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no172_m02.g1 MSMg01no172_m02.g1 CHROMAT_FILE:
MSMg01no172_m02.g1 PHD_FILE: MSMg01no172_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:17 2005
         (484 letters)



>mm_chr19_45115354_45116237
          Length = 884

 Score =  851 bits (440), Expect = 0.0
 Identities = 473/484 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacatgcaatctctgaaaatctgcccttctgagtggcagatggtaaaaaggaaggttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacatgcaatctctgaaaatctgcccttctgagtggcagatggtaaaaaggaaggttca 260

                                                                       
Query: 61  agattccattgtgtggagtctggggctctccgcttgcaacagaatgagctccaactccaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agattccattgtgtggagtctggggctctccgcttgcaacagaatgagcttcaactccaa 320

                                                                       
Query: 121 aaagctgaggagctatcccgattgcattagatgttcagtgcgtaacttaagggcagaacc 180
           | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acagctgtggagctatcccgattgcattagatgttcagtgtgtaacttaagggcagaacc 380

                                                                       
Query: 181 aagctagcacaggggagttagacagagacagcttttcttttgtgctgggacagatggcgg 240
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aagctagcacaggggagttagccagagacggcttttcttttgtgctgggacagatggcgg 440

                                                                       
Query: 241 gctttctatctggaagcatgaaaactggaacttggtaaattcttgaccaggatctaatgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 441 gctttctatctggaagcatgaaaactggaacttggtaaattcttgaccagaatctaatgg 500

                                                                       
Query: 301 cagaacgaggaagcctcttccatcccgtagactctgattctaaagagtagagcggtagga 360
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 501 cagaacgaggaagcctcttccatcccatagactctgattctaaagggtagagcggtagga 560

                                                                       
Query: 361 actacccggctaccagaggacagaacctctaattcagcatgctgcagttgagagtccata 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actacccggctaccggaggacagaacctctaattcagcatgctgcagttgagagtccata 620

                                                                       
Query: 421 ataggggccagtgaagaggcagggcagctggttctttagagaaatgaaagggggagagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataggggccagtgaagaggcagggcagctggttctttagagaaatgaaagggggagagat 680

               
Query: 481 ttgg 484
           ||||
Sbjct: 681 ttgg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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