Query= MSMg01no172_n06.b1 MSMg01no172_n06.b1 CHROMAT_FILE:
MSMg01no172_n06.b1 PHD_FILE: MSMg01no172_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:22 2005
(292 letters)
>mm_chr19_43841149_43841840
Length = 692
Score = 511 bits (264), Expect = e-149
Identities = 280/288 (97%), Gaps = 5/288 (1%)
Strand = Plus / Minus
Query: 1 caaggatcctttgcagatttttatctgttattccacctcctgttatgaagataaataata 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 581 caaggatcctttgcagatttttatctgttattccacctcctgttatgaagaaaaacaata 522
Query: 61 tattaaataaaatagaatatcacaaaaatttaaatatagataaatccttattctacataa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatt-----aaatagaatatcacaaaaatttaaatatagataaatccttattctacataa 467
Query: 121 actcttcactctaatttttttttctgattcaaaaattactatctctaagctaaaatggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actcttcactctaatttttttttctgattcaaaaattactatctctaagctaaaatggga 407
Query: 181 ccagaaaaacaagacctaccaatggaggtttgaatctttaacttttaaagaaaccacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccagaaaaacaagacctaccaatggaggtttgaatctttaacttttaaagaaaccacaag 347
Query: 241 acttaaaattgtattgatctgctttcctatttacatagttccgaatca 288
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 acttaaaattgtactgatctgctttcctatttacatagttccgaatca 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_n06.g1 MSMg01no172_n06.g1 CHROMAT_FILE:
MSMg01no172_n06.g1 PHD_FILE: MSMg01no172_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:23 2005
(296 letters)
>mm_chr19_43724092_43724787
Length = 696
Score = 518 bits (268), Expect = e-151
Identities = 289/296 (97%)
Strand = Plus / Plus
Query: 1 tgcacagtgagggagccaaatataagattctgtttctgcccgggcagtggtggtaatgca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcacagtaagggagccaaatataagattctgtttctgcccgggcagtggtggtaatgca 260
Query: 61 cacatttaatcctgcatctaggaggcagaggtgggcagagctttgagttcaaggccagcc 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cacatttaatcctgcatctaggaggcagaggcaggcagagctttgagttcaaggccagcc 320
Query: 121 tggtatacagagcgagttccaggacagccagggctacatggagaaaccctgtctcaagag 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtatacagagcaagttccaggacagccagggctacatggagaaaccctgtctcaagag 380
Query: 181 acaaaacaaaaccaaatctatttctgaaaggctgcatgcttacttaagggagggaggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaacaaaaccaaatctatttctgaaaggctgcatgcttacttaagggagggaggaaa 440
Query: 241 ggatgcttaatggttatttatgcatttacattatgaaaaagaaagtttgtatatca 296
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 441 ggatgcttaatggttatttataaatttacattatgaaaaagaaagtttgtgtatca 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
