Query= MSMg01no177_e07.b1 MSMg01no177_e07.b1 CHROMAT_FILE:
MSMg01no177_e07.b1 PHD_FILE: MSMg01no177_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:48 2005
(525 letters)
>mm_chr19_24271331_24272255
Length = 925
Score = 926 bits (479), Expect = 0.0
Identities = 508/525 (96%), Gaps = 12/525 (2%)
Strand = Plus / Plus
Query: 1 tcattcatgggaggagcaggtcactccttaggacaatgtggccagtgtcctaacctcaac 60
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 213 tcattcatgggaggagcaggtcactccttaggacaatgtggccagtg------------c 260
Query: 61 ctcaggcctgcaggaatgttctgctcagaagcaaagagcaaaaccagagggtaactttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaggcctgcaggaatgttctgctcagaagcaaagagcaaaaccagagggtaactttgt 320
Query: 121 ttatgaaggaccagtttgcaacaaatggttttgcatcatttagggagacaaggaccagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgaaggaccagtttgcaacaaatggttttgcatcatttagggagacaaggaccagag 380
Query: 181 aggaaatggttctccatatgagacttattcatgccagttgctaggaatctctaaacaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaatggttctccatatgagacttattcatgccagttgctaggaatctctaaacaaac 440
Query: 241 tactaatctgtcagtttaggggtgaacaccatcacaagccgccctagaccagacagtaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactaatctgccagtttaggggtgaacaccatcacaagccgccctagaccagacagtaaa 500
Query: 301 gacatgcagcttgtgtctgaggaccaaaccctctgtaatgatgactccaatgaggctatt 360
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 501 gacatgcagcttgtgtctgaggaccaagccctctgtaatgatgactttaatgaggctatt 560
Query: 361 tcacaatctaacaagtaaagactaaattagaattcagaaacggaaaatacacagaccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacaatctaacaagtaaagactaaattagaattcagaaacggaaaatacacagaccaca 620
Query: 421 tgtcatagctcccaattccctgactctgtgttcagaacgagcatccctgattcagtttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcatagctcccaattccctgactctgtgttcagaacgagcatccctgattcagtttta 680
Query: 481 acaagcccagacttgtcctccagctcctcgatagccagactctcc 525
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 acaagcccagacttgtcctccagctcctcgacagccagactctcc 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_e07.g1 MSMg01no177_e07.g1 CHROMAT_FILE:
MSMg01no177_e07.g1 PHD_FILE: MSMg01no177_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:48 2005
(147 letters)
>mm_chr19_24379506_24380052
Length = 547
Score = 203 bits (105), Expect = 4e-57
Identities = 137/148 (92%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 1 cttacacctgcatgatggccagatctttaaccacagncccaacaccagtatcaccctctt 60
|||||||||| |||||||||||| ||||| |||||| ||||||||||| |||||||||||
Sbjct: 347 cttacacctgtatgatggccagacctttagccacagtcccaacaccagcatcaccctctt 288
Query: 61 gtatctggcgttctgcccttgaaaaccatgggaaacttcggctgcttaaaaacattactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 287 gtatctggcgttctgcccttgaaaaccatgggaaacttcggctgcttaaaagcattactt 228
Query: 121 ttgccagg-cgtggtggcacaagccttt 147
| || ||| ||||||||| || ||||||
Sbjct: 227 tcgc-agggcgtggtggcgcacgccttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space: 74921
Effective search space used: 74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
