BAC Information

Click to search

BAC

Clone NameMSMg01-177G11
Chromosome19 (Build37)
Map Location 17,819,650 - 17,819,918
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177G11.T7 (MSMg01no177_g11.b1)MSMg01-177G11.TJ (MSMg01no177_g11.g1)
ACCAG371804AG371805
length716717
length of high quality
(start - end)
272 (45 - 316)248 (67 - 314)
definitionCHROMAT_FILE: MSMg01no177_g11.b1 PHD_FILE: MSMg01no177_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:58 2005CHROMAT_FILE: MSMg01no177_g11.g1 PHD_FILE: MSMg01no177_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXTATCAAAAAGAGGATCCGC
GGAATTCAATGTTTCACAAACTTAAGAAACTATCAATGTAGGTTACTTTT
CCCTGGTTTTACTGACAGAGACGGTAACATGCTTTGAGAGTTCCTAGACT
TAGTGGTATAAACTAGTGCAGCAACACCAGGTCTCAAGTGAGTGGCTCTA
CCAGCGGTCCTGCTAAGCTGGAGTCTACCTTTCACAGATGACTCTTGCTT
GCTTGAGAACATGCCACATGCTTGCAGCTTTCCACCATGTTGCATTTTCA
ATTAAAATAGCTAAATGTTTTTTCTTAAATGGATGATTTCCAAGCTGCTT
GGATAATAATGCTACAAACTCCACCAGATTTTATTAGAGTCAAATAACAG
TATAAACCAGTATGACCATGTGTGCCAACCACAGAAACAGCAATGCCTCA
AACTCTTGGAGCACCGAACACTATGTAGTTGGCTGATAAAGAACCATGTG
GCTTCAAATCATTTTTAGCAATTACTATGCTAGCTAGTTCATTGTTTTTG
GCAGATAGGCCCTCCTTAATGACAGAACTCAGCTAATTTTCACTTTGCTG
ATCGGCAAATATGATTCTGGAAAAACCACTCAGAGAGCTTTCATGAAATC
TGAGGTTGTGCATCAAAGACATGAGTCCCTTTGTTACTATCAGTCTTCAA
AGGACTGACTCTTCAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXATTCTAAAGAGGGTTAGGT
GACCTATAGTTTTCTCCGCGGAATTCTCTTTAGGTTTATATCTCATGTTT
CAATTGGATTATTTGACTTGTTTATGTCCAGTTTTTTTAGTTCTTTATAT
ATTTTGAATGTTAGTCCTCTGTCCAATATGGAGTTGGTGAAAATCTTTTC
TCATTCTATAGGTTGCCATTTTCTCCTATTGACAGCATCCTTTGCCTTAC
TGAAACTTTTCAAGTTCATGAGTTCTATTCAAGAAGTTGTCTCCTGTGCC
AATATGTCTAAAGATATTATTCTCCACTTTCTCTTCTATCACGTTCAGTG
TATCTGATTTTATGATGAGGTCTTTGATCCACTTAGACTTGAGTTTTGTG
TAGAGTGATACACCTGCATCTATTTGCCTTCTTCTACATCCTCTTAGACC
AGCATTATTTGTTGAAGATGCTTTTTTTCCCGTTGTGTTTTTCTGGGGCT
TATTGTGTTGTTTTGTGGTTTTTTTGCCTCTCTTACCCCATTTTTTTTTC
TCCACCCCATTTTTATTTTTCTTTATTTGCCGCTAACTTCCTTCGACTTA
TATTATATTTCTCCCTGTCACTTCCTATTAATGGACTCCAACTGTTTTGT
CCCTGTGGACGTTTCGATTCCTTTCTTTTTTTTCCTCAACAGCAACTTAA
GTATGTTTTCCATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_g11.b1 MSMg01no177_g11.b1 CHROMAT_FILE:
MSMg01no177_g11.b1 PHD_FILE: MSMg01no177_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:58 2005
         (272 letters)



>mm_chr19_17819443_17820118
          Length = 676

 Score =  462 bits (239), Expect = e-135
 Identities = 260/269 (96%), Gaps = 4/269 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaatgtttcacaaacttaagaaactatcaatgtaggttacttttccctggtttta 67
           ||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 208 gaattcaatgaggcacaaacttaagaaactatcaatgtaggttacttctccctggtttta 267

                                                                       
Query: 68  ctgacagagacggtaacatgctttgagagttcctagacttagt----ggtataaactagt 123
           |||||||||| ||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 268 ctgacagagagggtaacatgctttgagagttcctagacttagttagtggtataaactagt 327

                                                                       
Query: 124 gcagcaacaccaggtctcaagtgagtggctctaccagcggtcctgctaagctggagtcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcagcaacaccaggtctcaagtgagtggctctaccagcggtcctgctaagctggagtcta 387

                                                                       
Query: 184 cctttcacagatgactcttgcttgcttgagaacatgccacatgcttgcagctttccacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctttcacagatgactcttgcttgcttgagaacatgccacatgcttgcagctttccacca 447

                                        
Query: 244 tgttgcattttcaattaaaatagctaaat 272
           |||||||||||||||||||||||||||||
Sbjct: 448 tgttgcattttcaattaaaatagctaaat 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 676
Length adjustment: 9
Effective length of query: 263
Effective length of database: 667
Effective search space:   175421
Effective search space used:   175421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)