Query= MSMg01no179_i02.b1 MSMg01no179_i02.b1 CHROMAT_FILE:
MSMg01no179_i02.b1 PHD_FILE: MSMg01no179_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:32 2005
(491 letters)
>mm_chr19_3779542_3780432
Length = 891
Score = 934 bits (483), Expect = 0.0
Identities = 486/487 (99%)
Strand = Plus / Plus
Query: 5 gaattctcctgcctctgctggaattgtgggcatccattaccatgtccaccagttgttaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctgcctctgctggaattgtgggcatccattaccatgtccaccagttgttaaa 264
Query: 65 aagttttaacatgggggctagacaggtagctccctctttgtggcctccaaggttactagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagttttaacatgggggctagacaggtagctccctctttgtggcctccaaggttactagg 324
Query: 125 cacacacatggtggacatacaggcatatatgcaaagtactcatattactataaaagtaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacacatggtggacatacaggcatatatgcaaagtactcatattactataaaagtaag 384
Query: 185 tggggctggagagatggttcagtagttaatcacttactgctgttgtaaaggatcgggatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggggctggagagatggttcagtagttaatcacttactgctgttgtaaaggatcgggatt 444
Query: 245 tggttccaagcacttacatggtagcttacaactgcctgtaactcaggttccaggggatcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggttccaagcacttacatggtagcttacaactgcctgtaactcaggttccaggggatcc 504
Query: 305 atctctttcttcttacctttaagagcttctacaggcacatggtacatgtacatacaccca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctctttcttcttacctttaagagcttctacaggcacatggtacatgtacatacaccca 564
Query: 365 ggtacacaatagacatgtaaaaatgaataaaaataaaattattagggcttgagagatagc 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtacacaatagacatgtaacaatgaataaaaataaaattattagggcttgagagatagc 624
Query: 425 tcagcagttaagagcactgactattcttccagaggtcctaagtttagttcccagcaactt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagcagttaagagcactgactattcttccagaggtcctaagtttagttcccagcaactt 684
Query: 485 catggtg 491
|||||||
Sbjct: 685 catggtg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_i02.g1 MSMg01no179_i02.g1 CHROMAT_FILE:
MSMg01no179_i02.g1 PHD_FILE: MSMg01no179_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:32 2005
(505 letters)
>mm_chr19_3875970_3876876
Length = 907
Score = 953 bits (493), Expect = 0.0
Identities = 503/507 (99%), Gaps = 2/507 (0%)
Strand = Plus / Minus
Query: 1 aatgaggaatggaaaccaactctcccacactctgtaactttgtacatgccaaccccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aatgaggaatggaaaccaactctcccacactctgtaactttgtacatgccaaccccaaat 648
Query: 61 cacagg--aagtcagatccctgtggagcaggtcttgagaaggggagggacagctttgatt 118
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cacaggaaaagtcagatccctgtggagcaggtcttgagaaggggagggacagctttgatt 588
Query: 119 gtctgtctttgagcatggcagctgaaacccaagggaggaatgaacaagaatgtgggtgcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtctgtctttgagcatggcagctgaaacccaagggaggaatgaacaagaatgtgggtgcc 528
Query: 179 agcaggcaaagcagcaaatttctgggacaggggggctctgctactgcagctgcaacctga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agcaggcaaagcagcaaatttctgggacaggggggctctgctactgcagctgcaacctga 468
Query: 239 cagggaaagcgggaagcaccagcttacagtccagaaccttccaggggtggccagctggcc 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagggaaagggggaagcaccagcttacagtccagaaccttccaggggtggccagctggcc 408
Query: 299 atgcgacattgaccatcttgtgcacacaagtgtcccttccctgtaagtctaaagacacag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgcgacattgaccatcttgtgcacacaagtgtcccttccctgtaagtctaaagacacag 348
Query: 359 gagaatcgtcactaggtgcccacactccacagctcatttcacatctggagtctcaaggtc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gagaatcgtcactaggtgcccacactccacagctcatttcacatctggagtctcaaggtc 288
Query: 419 cctcgaatgcatgtgtctcggtgtcattggctccatttcagaatctgggaagaagccttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cctcgaatgcatgtgtctcggtgtcattggctccatttcagaatctgggaagaagccttt 228
Query: 479 ccaacttggctaccaaacccaggacaa 505
||||| |||||||||||||||||||||
Sbjct: 227 ccaacctggctaccaaacccaggacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space: 444015
Effective search space used: 444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
