BAC Information

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BAC

Clone NameMSMg01-183N23
Chromosome19 (Build37)
Map Location 54,741,630 - 54,837,385
singlet/doubletdoublet
Overlap geneLOC100043004
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N23.T7 (MSMg01no183_n23.b1)MSMg01-183N23.TJ (MSMg01no183_n23.g1)
ACCAG376332AG376333
length713751
length of high quality
(start - end)		276 (383 - 658)376 (376 - 751)
definitionCHROMAT_FILE: MSMg01no183_n23.b1 PHD_FILE: MSMg01no183_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:00 2005CHROMAT_FILE: MSMg01no183_n23.g1 PHD_FILE: MSMg01no183_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,837,110 - 54,837,385)(54,741,630 - 54,742,004)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACACAGAGGAGCAGGGCTCAGATCTTGTTAATCACTCACCTATC
TCCATACTGGTCATCATTTATTAAACAAATTCTTAAGTCTAGCTTATTAA
AACTACTAACTCATCTTGATCTGAGAGAAAAATCCACTTCCCCTACAATT
TCAATTGCAAAGCATGCATTTCTTGTCACTCCGCTGACATTACCGGGGCC
CTCAACTGTCATATCTCATTCAAAATGTCTCTCAAAAATACCTGCTACAT
AATAGATAGCAAGTGAATAGTACTTAATTCTGTCATCTTGATTTAGGTTA
TTATAATAACATCTCATTATTTATTGACATTAACCTAATGTTATAATGGC
TGTGATTGTCCCACGAAGCAATTGAAGTTCATACTCTTCATAACCTGCAT
GGGACATTGGCCCCACTCCCATGAGTTGATCGTGTTCCTTCTCCTTAATC
ACCTATACTTTTCTTCTAAAATCACTTTTAATAATCTGAGAGCAACTCTC
TTGCCCAACACTTTCAGGGAAGATCCATGCTGGTTATAAAGCATCCATTG
TGGAAGGACCTCATATTCCTAGGACTGCAAGGGTAGTGGAAGTCTGTCAT
TAAATGCAATGCCATACAACATCTCCCTGCATATATTTCTTCTAAAAATC
AGATGCCTTCTCC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGTTATCTGAGGGCCAACCCTTGCCATGA
ACTGGAAGCCTATATTCCCAACCTCTACTCTTTCTGCTCTGGCTGCCATT
GCTGAAACCTGCGGCTGCCACGGTCAATGCCATCGAAATAATTTCTGCCA
GCGAAGGCGTTCCTGTCAAGGATGCCAGAGACATTGCTGACACCCACATT
CCAGGCTCCTATTGCCACACCACTCACAAAATACAAGCTGCTCACAGGGA
ATCTGGGATACAGTGTCGACTGTTTATATAGAAGATGATTGGTATGGACA
CCAATGCATGCTACTGTGAAATGCACAAAAAAAATCCTTCCTGCCTGTCT
TTATAGAGACAGACATTCAGTGCTCTATTCTAATAGCAGGGTAACATGTA
ACTGTTAACAGAGTTAGAGATGTGGACGCATCTACCAACAGAGATAAATC
TAGAAAAATACAAGGTTGAAATAAAAACATAGGAGAAAGCCTTATGTTCC
TCACAGGTGAGTTTTCATGCAACGAGATATTCAAATTATTTAGAATAGTT
AGCAAACACATTGGAGAGAATGAATCATAAAAATATTAATCTCCCTGAAC
TGATGCAAGGATTAGATGAGATACCACGCCCAAATACTCTGGTACAATGT
CTGTCCCTAAAGTGTGGTACTCAGAGGAAACTGGTTCCATCCCTCCCAGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n23.b1 MSMg01no183_n23.b1 CHROMAT_FILE:
MSMg01no183_n23.b1 PHD_FILE: MSMg01no183_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:00 2005
         (276 letters)



>mm_chr19_54836910_54837585
          Length = 676

 Score =  534 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctaatgttataatggctgtgattgtcccacgaagcaattgaagttcatactcttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 acctaatgttataatggctgtgattgtcccacgaagcaattgaagttcatactcttcata 417

                                                                       
Query: 61  acctgcatgggacattggccccactcccatgagttgatcgtgttccttctccttaatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 acctgcatgggacattggccccactcccatgagttgatcgtgttccttctccttaatcac 357

                                                                       
Query: 121 ctatacttttcttctaaaatcacttttaataatctgagagcaactctcttgcccaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctatacttttcttctaaaatcacttttaataatctgagagcaactctcttgcccaacact 297

                                                                       
Query: 181 ttcagggaagatccatgctggttataaagcatccattgtggaaggacctcatattcctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttcagggaagatccatgctggttataaagcatccattgtggaaggacctcatattcctag 237

                                               
Query: 241 gactgcaagggtagtggaagtctgtcattaaatgca 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gactgcaagggtagtggaagtctgtcattaaatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no183_n23.g1 MSMg01no183_n23.g1 CHROMAT_FILE:
MSMg01no183_n23.g1 PHD_FILE: MSMg01no183_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:00 2005
         (376 letters)



>mm_chr19_54741429_54742204
          Length = 776

 Score =  679 bits (351), Expect = 0.0
 Identities = 369/375 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaaaaatccttcctgcctgtctttatagagacagacattcagtgctctattctaatag 61
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 aaaaaaaacccttcctgcctgtctttatagagacagatattcagtgctctattctaatag 261

                                                                       
Query: 62  cagggtaacatgtaactgttaacagagttagagatgtggacgcatctaccaacagagata 121
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 262 cagggtaacatgtaactgttaacagagttagagatgtggatgcatctaccaacagagata 321

                                                                       
Query: 122 aatctagaaaaatacaaggttgaaataaaaacataggagaaagccttatgttcctcacag 181
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322 aatctagaaaaatacaaggttgaaataaaaacataggagaaagccttgtgttcctcacag 381

                                                                       
Query: 182 gtgagttttcatgcaacgagatattcaaattatttagaatagttagcaaacacattggag 241
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 gtgagttttcatgcaacgagatattcaaattatttagaacagttagcaaacacattggag 441

                                                                       
Query: 242 agaatgaatcataaaaatattaatctccctgaactgatgcaaggattagatgagatacca 301
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 agaatgaatcataaaaatattaatctccctgaactgatgcaagggttagatgagatacca 501

                                                                       
Query: 302 cgcccaaatactctggtacaatgtctgtccctaaagtgtggtactcagaggaaactggtt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgcccaaatactctggtacaatgtctgtccctaaagtgtggtactcagaggaaactggtt 561

                          
Query: 362 ccatccctcccagaa 376
           |||||||||||||||
Sbjct: 562 ccatccctcccagaa 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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