BAC Information

Click to search

BAC

Clone NameMSMg01-186E20
Chromosome19 (Build37)
Map Location 11,270,840 - 11,433,074
singlet/doubletdoublet
Overlap geneMs4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7
Upstream geneFads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik
Downstream geneMs4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E20.T7 (MSMg01no186_e20.b1)MSMg01-186E20.TJ (MSMg01no186_e20.g1)
ACCAG378027AG378028
length739799
length of high quality
(start - end)		314 (46 - 359)166 (75 - 240)
definitionCHROMAT_FILE: MSMg01no186_e20.b1 PHD_FILE: MSMg01no186_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:15 2005CHROMAT_FILE: MSMg01no186_e20.g1 PHD_FILE: MSMg01no186_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(11,270,840 - 11,271,147)(11,432,947 - 11,433,074)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAGCAATCTTGTCAACACAGTGAGACCCCACATTTCAAAAAGT
AAATAAAAGTATTTTTTAGAAGGTCAAACGAGAGGGTATAAAAGATGGAG
AATGGAGATGTGCCCACCTCTCTTTCCTCAACCCCCTTTCTCCAGACCGT
GTCCATTTTGATGCTTAGCAAAAGTAAAGAGGCACACTGTTACCTCACAT
TTCAGTTGTCCCAAGACCTAAGGATCCAGTTTCACCCTATCAGGCCTAGG
CACAGGCTGAAGAGAAGGATCACTTTGTTTGGTGCTCTCAGCGCTAGATC
TGGCTGTTTTNNCATACCTCTAGCCGNGACCACTCTAGNTACCTGGTGGT
TGTCNTGTTCCCCCCCCCCCCTTTAAAAAAAAAAAAAAGGGGCGGGGCGT
AGGGGATAGGAATGATAAAATGTGTGGAGACTCATTGTTTACTGCTTCCC
ACGCCCTGGCCCCTCTATATTTTTCTCTTCAGCCATTTTCTTCTCACGAT
TTACCTGTACATTCTTTATTCTTTTGTCCTTTCTTTATCCATCACTCTGT
TCTTTTTGTCTTCTTGTTTTTCTTTTTTATATTATTATTTATAACCGAGT
TCTCTGATATTTACTTTTTTTGTTATTTCTATCTTTTTAATACCTTTTTA
CAGATCTTTTCTACCCTCACGCTAATTATTACATTATTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATATCTCTGGTAGAAAATAACAGAA
AATAAAACCATCCATTCTCCCATGGCAAATAAATCAGGAAGATATGGACT
TTTCCTACAAATAGCCCTAGATTTGGAGTTGACTGTCCCTCCAGGACCCT
GTCCTAGTACCTCAGGTGGTGGTGTTAAGTGGGTGTGANNTNTTNNNNNN
NNNTNTTTTNTNNTTTNTNTTNNTTTTTTTTTTTNTNTTTTTTNNTTNNN
TNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTNTNNNTTTTTTTTTTTN
NNNNNNNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNTGTGTGGCCCCCCCCCAAAAAAAAAAAAAAAAAANN
NNGGGGGGTGGGGGGTNGANAGTAATAAAAGAGAGAAGTAAGAGATAATA
AAAATGGAGATAATTGGATATAGGATGGATAATATAAGTAAAATATAATA
ATTAATTATATTTAATAATTTGGAGTGTTTGATAATCATGATATTAGTAT
GAGTATTATTTTATTACAGATAATATTTTTATTTGCGTTTTTATTATTTG
TAAACCTTTTATTCTTTCCTCTCCCCTTTATCTCTCCCCCTTTCAATACT
TCTCTTCCCCTTCACTCCCCGTCATAACTATCCCTCCCTCCTCCTTCTTC
TTTTCCTTTACACCTCCCCCATTTGATACTCTTACGCTTTTACTCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e20.b1 MSMg01no186_e20.b1 CHROMAT_FILE:
MSMg01no186_e20.b1 PHD_FILE: MSMg01no186_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:15 2005
         (314 letters)



>mm_chr19_11270637_11271350
          Length = 714

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctagagcaatcttgtcaacacagtgagaccccacatttcaaaaagtaaataaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagagcaatcttgtcaacacagtgagaccccacatttcaaaaagtaaataaaa 263

                                                                       
Query: 64  gtattttttagaaggtcaaacgagagggtataaaagatggagaatggagatgtgcccacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtattttttagaaggtcaaacgagagggtataaaagatggagaatggagatgtgcccacc 323

                                                                       
Query: 124 tctctttcctcaaccccctttctccagaccgtgtccattttgatgcttagcaaaagtaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctttcctcaaccccctttctccagaccgtgtccattttgatgcttagcaaaagtaaa 383

                                                                       
Query: 184 gaggcacactgttacctcacatttcagttgtcccaagacctaaggatccagtttcaccct 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 gaggcacactgttacctcacatttcagttgtcccaagacccaaggatccagtttcaccct 443

                                                                       
Query: 244 atcaggcctaggcacaggctgaagagaaggatcactttgtttggtgctctcagcgctaga 303
           |||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||
Sbjct: 444 atcaggcctaggcacaggctgaagagaaggatcaccgtggatggtgctctcagcgctaga 503

                   
Query: 304 tctggctg 311
           ||||||||
Sbjct: 504 tctggctg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_e20.g1 MSMg01no186_e20.g1 CHROMAT_FILE:
MSMg01no186_e20.g1 PHD_FILE: MSMg01no186_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:15 2005
         (166 letters)



>mm_chr19_11432747_11433312
          Length = 566

 Score =  217 bits (112), Expect = 4e-61
 Identities = 124/128 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatctctggtagaaaataacagaaaataaaaccatccattctcccatggcaaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 328 aatatctctggtagaaaataacagaaaataaaaccatccattctcccatgaaaaataaat 269

                                                                       
Query: 61  caggaagatatggacttttcctacaaatagccctagatttggagttgactgtccctccag 120
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 caggaagatatggaattttcctacaaatagccctagttttggagttgactgtccctccag 209

                   
Query: 121 gaccctgt 128
           ||||||||
Sbjct: 208 gaccctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |