Query= MSMg01no186_h01.b1 MSMg01no186_h01.b1 CHROMAT_FILE:
MSMg01no186_h01.b1 PHD_FILE: MSMg01no186_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:25 2005
(606 letters)
>mm_chr19_50275572_50276583
Length = 1012
Score = 1110 bits (574), Expect = 0.0
Identities = 597/608 (98%), Gaps = 6/608 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgagtttgctctaagacagtctctaaaacatttccagctacgtctgaatatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcatgagtttgctctaagacagtctctaaaacatttccagctacgtctgaatatct 753
Query: 65 taaggaagccagtcaaaggtattttgcactgaaatccaagcatgcaaggagaggtggcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 taaggaagccagtcaaaggtattttgcactgaaatccaagcatgcaaggagaggtggcat 693
Query: 125 gtctgttttgcagactcattcaagatgaatatcccctggaccactaatgaacatctaatg 184
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 692 gtctgttttgcagcctcattcaagatggatatcccctggaccactaatgaacatctaatg 633
Query: 185 agcccaaagactttcaccaccaccactcagctctgcagagaaatccggtgcaagcactgg 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 632 agcccaaagactttcaccaccaccactcagctctgcagagaaatccggtacaagcactgg 573
Query: 245 caggcacgtggtgaccaggaaggacccactcagtcttaggaactcaacagcactaattta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caggcacgtggtgaccaggaaggacccactcagtcttaggaactcaacagcactaattta 513
Query: 305 gaaggcatttatttgagagtgctgctggccagaagtggtgtctatgtgccacgggagtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaaggcatttatttgagagtgctgctggccagaagtggtgtctatgtgccacgggagtta 453
Query: 365 attaaatctgcttaacacagctgtaagaataaggagagacaagtctctgcatatcttaag 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 attaaatctgtttaacacagctgtaagaataaggagagacaagtctctgcatatcttaag 393
Query: 425 gctttaaaattaagtcttaggcaagggactaaaattaaaactgtg------atcccattg 478
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 392 gctttaaaattaagtctcaggcaagggactaaaattaaaactgtgatctgtatcccattg 333
Query: 479 ttttaatacttcaatttatataccaaggctagaactcaataagcaacattcttggttata 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttttaatacttcaatttatataccaaggctagaactcaataagcaacattcttggttata 273
Query: 539 ggttccatgagatttaactctaaaccaagagccacggactgtgttgtcattgtatagatt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggttccatgagatttaactctaaaccaagagccacggactgtgttgtcattgtatagatt 213
Query: 599 cctcccag 606
||||||||
Sbjct: 212 cctcccag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1012
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1002
Effective search space: 597192
Effective search space used: 597192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_h01.g1 MSMg01no186_h01.g1 CHROMAT_FILE:
MSMg01no186_h01.g1 PHD_FILE: MSMg01no186_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:25 2005
(500 letters)
>mm_chr19_50153941_50154840
Length = 900
Score = 905 bits (468), Expect = 0.0
Identities = 492/500 (98%)
Strand = Plus / Plus
Query: 1 cagtcctgacttcttttagtgatgaacagcaaagtggaagtgtaagctgaataaaccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcctgacttcttttagtgatgaacagcaaagtggaagtgtaagctgaataaaccctt 260
Query: 61 tctcctccagtttgcttcttggtcatgatatttgtgcaggaatagaaaccctgactaaga 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tctcctccagtttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaaga 320
Query: 121 cagttaccatattttctacttcccttctccgccttttctaattctttcctttctcttcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttaccatattttctacttcccttctccgccttttctaattctttcctttctcttcac 380
Query: 181 ctctcctaaatatttgattcaaaggttttgccaacaaagcactatcacatgtactgggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcctaaatatttgattcaaaggttttgccaacaaagcactatcacatgtactgggtt 440
Query: 241 gctatgtgacttaaatcaatttgtagtcttgacttggttaaggaatcggtactctgagaa 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gctatgtgacttaaatcaatttgtagtcttgacttggttaaggaatcagtactctgagaa 500
Query: 301 cagggcactaagaattttgaaaaaccgttgacactatatattcgaacaaaaaccactatg 360
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 cagggaactaagaattttgaaaaaccattgacactatatattcgaacaaaaaccactatg 560
Query: 361 taaaatgtgcgcagaacccttcagaactgtagcacgtattatcctcctgcttgttctgat 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 taaaatgtgcgcagaagccttcagaactgtagcacgtattatcctcctgcttgttatgat 620
Query: 421 cctaggtgcatgattccagagatttctgggtcacaccagtatctggtgagccttaccacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cctaggtgcatgattccagagatttctgggtcacaccagtatctggtgagccttagcacc 680
Query: 481 catgagaagctgactgagaa 500
||||||||||||||||||||
Sbjct: 681 catgagaagctgactgagaa 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
