BAC Information

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BAC

Clone NameMSMg01-186K24
Chromosome19 (Build37)
Map Location 29,025,935 - 29,026,253
singlet/doubletsinglet
Overlap gene4430402I18Rik
Upstream geneRfx3, LOC433235, Glis3, EG434460, EG627788, Slc1a1, LOC545262
Downstream genePpapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K24.T7 (MSMg01no186_k24.b1)MSMg01-186K24.TJ (MSMg01no186_k24.g1)
ACCAG378294AG378295
length741743
length of high quality
(start - end)		321 (46 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no186_k24.b1 PHD_FILE: MSMg01no186_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:45 2005CHROMAT_FILE: MSMg01no186_k24.g1 PHD_FILE: MSMg01no186_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGAACACATTATCCCCACTCATTTAAAAAAAAAAAGGACTATA
AGAAAAGAAAATTCTAGTAACAATACCAGTTTGAGGGCTACCTTGCATTT
CTAACACACATGACAGTTATCACCATGCTTCTGGATAGAGTAGCTCATTG
CTTCTCCTCGAGACTGAGAGTTTAACACACCCGTCATGATGCCACGTGGC
AAAGCAGGCATTCAAAGCTAGGTCTGCCTGAGGTCTTACTGCCTTCTAGT
GACCATCACTAACTGCGGAGGAAAACTGCTCTGGACTTGCTAAAGAGAGA
GTATTAAAGCTTACGTCTGAGGACACTAATAAAAAGATAGCATCGAGCTC
ACAGTCACATAGTGTCACACCGCTCCCTGTGTCTGTCACTTCTTCACACC
AAAACTGAACAACTAGAGGGGTCTTCATTTTCTGGGAGCAAGTTCGCTGA
CTCTAATTCTTCTCTGCAGTAAGCTCCACGCAGAGCTAAGCATGGCTACT
GTATTCCTAACCTACAAGTGTCTGAAGATGCTGTGAAAACTGTCAAACAA
GAATATACTATCTACAGCAAAACAAAGAGGTAATGGTCAGCTGGTAAAAG
AACCAGTCTCCAAGATCCAGCATGGTCCATATGAACCTATGCTTGAATTT
ATGCAAACAACTTTTATTCGTTAATACCTAAGAACTCCGCT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCCATTCCTTTTTCAAGTCA
CTACAGGCCTACCAGTCCCCCCATACAGGCTATTCAATTACTATCTGAGA
GACCCAGCCAACCTCCAATTCCACCAGCAGTTTCCACTTGTTCAAGTCCG
ATGATACGTCTGGATCAAATGAGTAGCCGAGAGGGTGTGAAGCTAACCTG
GAGAGGACCCTGCACGATGATTCTCTTCACTCCTATGACAGTGAAGACGG
CTGCCACTACACCATTGGTCTGCCACAGCCAGGTGAAGAAAGAAGAAGCC
ATGGGCAATTGCTGCCAAGTGTACAAACGGACTGCCTCGGGACTATGGGC
TCATTGAAATTAAGGTTTAATGCACCCCCAGGCCCTTCCACTCCCTGCCC
GTCTCCCTCCTCCTGAGTCTTGTGGTTTGCACCATGGATATGAATGCAAG
GTCATGGTCCAAGACTCATTGTCCTCAGGCCTGGACTGGAACCTGAGAAA
GGCAGGTACAGTGAAGGGGTTAGCTAGTGTGACCTTGACTTGCTGATGTC
TACTCTAAGTGGCTGGAATTTACTGAATTGGAAAGATTACGGGAATTTAT
ATTTGGGATATGAATACTAGCGTTCAATGGTATTGCTTGCCCTTCTTCTG
GAACCCTGTTTGCCTGAATTTACCAAGGCTCCTTTAGTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k24.b1 MSMg01no186_k24.b1 CHROMAT_FILE:
MSMg01no186_k24.b1 PHD_FILE: MSMg01no186_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:45 2005
         (321 letters)



>mm_chr19_29025732_29026450
          Length = 719

 Score =  524 bits (271), Expect = e-153
 Identities = 307/321 (95%), Gaps = 6/321 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgaacacattatccccactcatttaaaaaaaaaaaggactataagaaaaga 63
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgaacacattatccccactcatt--aaaaaaaaaaggactataagaaaaga 261

                                                                       
Query: 64  aaattctagtaacaataccagtttgagggctaccttgcatttctaacacacatgacagtt 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||
Sbjct: 262 aaattctagtaacaataccagtttgagggctaccttgcatttctagcatgcatgacagtt 321

                                                                       
Query: 124 atcaccatgcttctggatagagtagctcattgcttctcctcgagactgagagtttaacac 183
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 atcaccatgcttctgggtagagtagctcattgcttctccttgagactgagagtttaacac 381

                                                                       
Query: 184 acccgtcatgatgccacgtggcaaagcaggcattcaaagctaggtctgcctgaggtctta 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acccgtcgtgatgccacgtggcaaagcaggcattcaaagctaggtctgcctgaggtctta 441

                                                                       
Query: 244 ctgccttctagtgaccat--c--actaactgcggaggaaaactgctctggacttgctaaa 299
           ||||||||||||||||||  |  |||||||||||||||||||||||||| ||||||||||
Sbjct: 442 ctgccttctagtgaccattactaactaactgcggaggaaaactgctctgaacttgctaaa 501

                                
Query: 300 gagagagtattaaagcttacg 320
           | |||||||||||||||||||
Sbjct: 502 gtgagagtattaaagcttacg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space:   221520
Effective search space used:   221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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