BAC Information

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BAC

Clone NameMSMg01-187L02
Chromosome19 (Build37)
Map Location 54,930,542 - 54,930,881
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a, LOC100043004
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187L02.T7 (MSMg01no187_l02.b1)MSMg01-187L02.TJ (MSMg01no187_l02.g1)
ACCAG378953AG378954
length729755
length of high quality
(start - end)
270 (37 - 306)340 (88 - 427)
definitionCHROMAT_FILE: MSMg01no187_l02.b1 PHD_FILE: MSMg01no187_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:05 2005CHROMAT_FILE: MSMg01no187_l02.g1 PHD_FILE: MSMg01no187_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
GGATTAGAAGGATTATGCTGATGGAGGAAGTATGTCAAGGTTGGTTGGGT
TTGAGGTTTCAAGAGCCTGCATCAGGTACAGTGTCTCTTTCTCACTCCCA
GCCACCTGTGGATCAGGATGCAGAACTCTCAACTACTTCTCCAGAACTAT
GTCTGCCTGTGTGCTGACATGTTCCCTGCCATGATGATAATGTACCAAGC
CTTTGAACTATGAGTCATCCCCCAGTTAAGTGCTTTCTTTTGTAAGAATT
TCTTTGTTCATGACATCTCTTCCCAGCAATAGTACACTAATGAAGACAAT
GATGTTTTTTTTCCCCCCCCCCCCCATCTAATGATTCATTTCTGACTATC
TCTAGCTGCTCCCCTCTTATATATGGATATTCTTTTTCCCTTCTCTTTTT
ATGCCTTCCTGCTTTCCCACCGCGTGATTTGACTATTTGATATGCACACT
TTACTTCCCTTATTTTCTATTCCCCGTCTTTAACCTTTTGTCATGTATGT
TTTTGACCTTCCCTATTCACCCCTATTCTTTTTTCCTTTTTTTTTCCCCC
TTTTTTCTTCTTTTTCCGCCCTTCTCTATTTTACCTCCTCTTTTTCCCGT
CTTTTTTCCCCCCTTTTCCGCCTTTTTCTTCCCTCCCCCTTTTTTTTCAT
ATTCCTCCCTTTATCCATTTTCCCCCTTT
TCTTTTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAAGTGGAA
CCAGTTGCTCTGAACTCTGTAAAACAAGGACAGATACCCATTCCACCAGA
GGAATTGTGATGCAAATCGAAGGAGAGCGCTCAGTGCATAGTGGTGCTAC
GATGAGCTATGAGAAGTAGTGATCTTAGCATGCATAAGGCCACGTGATGC
AGAAATTCATAAATCATAACTTTAACCAGAATTGAACACCTATTGTTATT
CTGTCTTTCATCTTTCTGTTCTGGGATTGTGTATTAGAAAAGTGATGTCT
CCCTGGACTCAAGGCCAAATGCAGACTGTTATGATTTGCTCAAAGTGCTG
AAAATCTCTATTTCCTGCAAATGTGTGACGCCAGGGAAAGAGTCAAGACA
GACTAAGATTGGAAGAGGGAAATGTGTGTGAGTGTCTGTCCTGTGGGAAA
AGAAGACCCTAGTACTATAATGTCCACCTTCCTTCTTCACAGGAGATACA
TCATAAGACCTCACGCAGACCCCTTAAAACTCAGGTACTACCCAACATTA
CATACTTTTCTAACCACACATACATATAATATTTAATTTAGTACTAGGCA
CCCTAAGAGATTATCTTGATGATCAATAATACAATGATTAGATAATACAC
CGCCGGAACACGATTACCATCCAGCTGTCATTTTCGTAGTCCGCGTATCC
TTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_l02.g1 MSMg01no187_l02.g1 CHROMAT_FILE:
MSMg01no187_l02.g1 PHD_FILE: MSMg01no187_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:05 2005
         (340 letters)



>mm_chr19_54930342_54931081
          Length = 740

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catataagtggaaccagttgctctgaactctgtaaaacaaggacagatacccattccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 catataagtggaaccagttgctctgaactctgtaaaacaaggacagatacagattccacc 260

                                                                       
Query: 61  agaggaattgtgatgcaaatcgaaggagagcgctcagtgcatagtggtgctacgatgagc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 agaggaattgtgatgcaaatcgaaggagagcactcagtgcatagtggtgctacgatgagc 320

                                                                       
Query: 121 tatgagaagtagtgatcttagcatgcataaggccacgtgatgcagaaattcataaatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgagaagtagtgatcttagcatgcataaggccacgtgatgcagaaattcataaatcat 380

                                                                       
Query: 181 aactttaaccagaattgaacacctattgttattctgtctttcatctttctgttctgggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttaaccagaattgaacacctattgttattctgtctttcatctttctgttctgggat 440

                                                                       
Query: 241 tgtgtattagaaaagtgatgtctccctggactcaaggccaaatgcagactgttatgattt 300
           | ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||
Sbjct: 441 tatgtattagaaaagtgatgtctccctggactcaaggccaaatgcaggctgggatgattt 500

                                                   
Query: 301 gctcaaagtgctgaaaatctctatttcctgcaaatgtgtg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcaaagtgctgaaaatctctatttcctgcaaatgtgtg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)