BAC Information

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BAC

Clone NameMSMg01-189C13
Chromosome19 (Build37)
Map Location 14,265,198 - 14,265,536
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189C13.T7 (MSMg01no189_c13.b1)MSMg01-189C13.TJ (MSMg01no189_c13.g1)
ACCAG379939AG379940
length746710
length of high quality
(start - end)
341 (394 - 734)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no189_c13.b1 PHD_FILE: MSMg01no189_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:03 2005CHROMAT_FILE: MSMg01no189_c13.g1 PHD_FILE: MSMg01no189_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGAAATAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTCATTTGATCTGCCTGTCCATATTAAGCATAGTT
ATTTGAAACTTGTGTCTTAGATTTCTACTTGATTAGAATCCCTTGAAGAT
AGTTTCTATAGCTTGTCACTTTAAATTTCACAGTTTTGTCTTCACTGTGT
TCATTTTGATTGAGTGGTGGACATTGTACATGAACAACTGAAATCAAACC
TATTTATGACATCTTCCACTTAAGAAGTCCATGTGAATCTGAAAGCCAAA
TGTCTTGGTTTTGGGTTTTGACAAGTGAACTAGCCATTGCAGTTCAATAT
TAAAAATATGCTAAGATAGGATTTATACTTCCACCCCCCCCTTACCTACT
GAGTGTGTGTATTCCAATTGAGAGTAGAAAGAACTCAAAAATCTGTTTTT
TACATTGACAAAGACCAAATTATTATTTTTTTATCATAAGGACCTATGAG
GATTTGATTATTCAACTTAACAGCCTGAATTTTGACTATCCTTTCAGAAA
TCCACAGGTGCTCTCAGAAGCAAAGAACTTTCAGGAGCTGAGCTCTACTT
TCTGGCTCTTGTTCTTACTGTTGTTCCAATCCCCATCCCCCCCTCCCAGC
TTCCTCCTCCCCCATCTCCTCCCCCTCCCCCACTGGAGTCTTTCACTGAA
ATGTTACTTACTAATTCTACAATCGTTTTAGTACCTTGGTGCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCAAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCATTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGTAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCTTGTTCATATACCCACCACCACGTTCCAACCGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAACCTGATTTATAATAGCCA
GAAGCTGGAAAGAACCCGGATGCCCCTCAACAGAGGAATGGATAGAAAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATCAAAAAGAATGA
ATTTGTGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATA
AGCGGATATTAGCCCAGAAACTTAGTATAGTGAGATATAAGGTTCAATTT
GCAAAACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_c13.b1 MSMg01no189_c13.b1 CHROMAT_FILE:
MSMg01no189_c13.b1 PHD_FILE: MSMg01no189_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:03 2005
         (341 letters)



>mm_chr19_14265091_14265832
          Length = 742

 Score =  623 bits (322), Expect = 0.0
 Identities = 336/342 (98%), Gaps = 4/342 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctactgagtgtgtgtattccaattgagagtagaaagaactcaaaaatctgttttttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acctactgagtgtgtgtattccaattgagagtagaaagaactcaaaaatctgttttttac 387

                                                                       
Query: 61  attgacaaagaccaaattatt-atttttttatcataaggacctatgaggatttgattatt 119
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attgacaaagaccaaattattaatttttttatcataaggacctatgaggatttgattatt 327

                                                                       
Query: 120 caacttaacagcctgaattttgactatcctttcagaaatccacaggtgctctcagaagca 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 caacttaacagcctgaattttgattatcctttcagaaatccacaggtgctctcagaagca 267

                                                                       
Query: 180 aagaactttcaggagctgagctctactttctggctcttgttcttactgttgttccaatcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagaactttcaggagctgagctctactttctggctcttgttcttactgttgttccaatcc 207

                                                                       
Query: 240 ccatccccccctcccagcttcctcctcccccatctcctccccctcccccactggagtctt 299
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccat---cccctcccagcttcctcctcccccatctcctccccctcccccactggagtctt 150

                                                     
Query: 300 tcactgaaatgttacttactaattctacaatcgttttagtac 341
           |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 149 tcactgaaatgttacttactaattctacaatcattttagtac 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 742
Length adjustment: 9
Effective length of query: 332
Effective length of database: 733
Effective search space:   243356
Effective search space used:   243356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)