Query= MSMg01no189_h17.b1 MSMg01no189_h17.b1 CHROMAT_FILE:
MSMg01no189_h17.b1 PHD_FILE: MSMg01no189_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:28 2005
(315 letters)
>mm_chr19_55027635_55028349
Length = 715
Score = 470 bits (243), Expect = e-137
Identities = 284/307 (92%), Gaps = 16/307 (5%)
Strand = Plus / Minus
Query: 5 gaattcttgggtagggactcacataggtagtaataattcttattttccctatcaaaaata 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattcttggctagggactcacataggtagtaataattcttattttccctatcaaaaata 599
Query: 65 aaccataaaacaccatcatacttaaatacaatgcctcttgaggtgtgttttatcttttgt 124
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 598 aaccataaagcaccatcatacttaaatacaatgccttttgaggtgtgttttgtcttttgt 539
Query: 125 gtgtgtgtgtgtgtatatatatatatatatatatatatatatccacagttgacactgctt 184
||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 538 gtgtg---------------a-atatatatatatatatatattcacagttgacactgctt 495
Query: 185 tatgagggtttaagtattccataataatcaaagacacttaggcagtttttcttcctgtaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatgagggtttaagtattccataataatcaaagacacttaggcagtttttcttcctgtaa 435
Query: 245 gtaatttcagctaagaactcaaccagacttaattactgcatttgggcaagaaaataaggt 304
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 434 gtaatttcagctaagaactcaaccagagttaagtactgcatttgggcaagaaaataaggt 375
Query: 305 actttag 311
|||||||
Sbjct: 374 actttag 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_h17.g1 MSMg01no189_h17.g1 CHROMAT_FILE:
MSMg01no189_h17.g1 PHD_FILE: MSMg01no189_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:28 2005
(625 letters)
>mm_chr19_54995488_54996513
Length = 1026
Score = 1180 bits (610), Expect = 0.0
Identities = 622/626 (99%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 1 cacagggaccctctccattagctgccctgaccacttgataaagacttcgcattaacacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacagggaccctctccattagctgccctgaccacttgataaagacttcggattaacacgc 260
Query: 61 cctgcctgattctctctggcttctctttacacccctgcttggaaatgtgttgctgtgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcctgattctctctggcttctctttacacccctgcttggaaatgtgttgctgtgtct 320
Query: 121 gaaggaagcagccagtcatacaagataagcaagatcgaaatcatctttgaagttccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggaagcagccagtcatacaagataagcaagatcgaaatcatctttgaagttccattt 380
Query: 181 ctaaaggaatacttgggattttcagctctagaatacttagtaattagagacgcaattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaaggaatacttgggattttcagctctagaatacttagtaattagagacgcaattcat 440
Query: 241 caggagggaaaatgacaaagttgacatttcaactgaaaagtcactggagctagggaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggagggaaaatgacaaagttgacatttcaactgaaaagtcactggagctagggaatct 500
Query: 301 gtctctaaacgtattaattacaggaggttgcttttggatggtggttgacgctaaaccatg 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctcgaaacgtattaattacaggaggttgcttttggatggtggttgacgctaaaccatg 560
Query: 361 atgcgccaaaaaaaaaaaaaaa-tgttttctttccatcagttctgctgatccgacgcaga 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcgccaaaaaaaaaaaaaaaatgttttctttccatcagttctgctgatccgacgcaga 620
Query: 420 ttcccccagaagtcttcgtttctctgtgaagtcttgcctgacaatgggctttgtttccat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcccccagaagtcttcgtttctctgtgaagtcttgcctgacaatgggctttgtttccat 680
Query: 480 cggatataatagaaggtaaattcattaaaatgttccgacgtgcccaagctaatgggattt 539
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagatataatagaaggtaaattcattaaaatgttccgacgtgcccaagctaatgggattt 740
Query: 540 actactccatggcgatagatctacaggtccaattgttcttgatagactagactggcttgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actactccatggcgatagatctacaggtccaattgttcttgatagactagactggcttgc 800
Query: 600 aaaatacaagtcaggccatggaagga 625
||||||||||||||||||||||||||
Sbjct: 801 aaaatacaagtcaggccatggaagga 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
