Query= MSMg01no193_b12.b1 MSMg01no193_b12.b1 CHROMAT_FILE:
MSMg01no193_b12.b1 PHD_FILE: MSMg01no193_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:19 2005
(470 letters)
>mm_chr19_19188987_19189854
Length = 868
Score = 859 bits (444), Expect = 0.0
Identities = 460/466 (98%), Gaps = 2/466 (0%)
Strand = Plus / Plus
Query: 5 gaattccttgtattttaacctccttaaaatttgggggaagaaaatataaaggttgagatt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgtattttaaactccttaaaatttgggggaagaaaatataaaggttgagatt 264
Query: 65 gctcacatgactataaaagtaaatctacctacttttatattcattactagatttatttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctcacatgactataaaagtaaatctacctacttttatattcattactagatttatttta 324
Query: 125 ctcacagaatcttatataatctgtttgtattttcaattctactttcttttaaacatagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcacagaatcttatataatctgtttgtattttcaattctactttcttttaaacatagtt 384
Query: 185 tgacaactatgcacattaaaggaaagaaagcaatagatacatacatacatatatgtatgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgacaactatgcacattaaaggaaagaaagcaatagatacatacatacatatatgtatgt 444
Query: 245 atatacatatgtgtatatataatgtgtaatttgtgctttataatatattagggaaggtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatacatatgtgtatatataatgtgtaatttgtgctttataatatattagggaaggtag 504
Query: 305 caagggctaaataaagcacaaattaatcccaatatcaagagtagaaatgaggaagattga 364
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 caagggctaaataaagcacaaattaatcccaatatcaagagtagaaatgaagaagattgg 564
Query: 365 gcccagggaaagaaaaaaaatgcacagtttttttttttaaaaagagagaaaaggagctaa 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 gcccagggaaagaaaaaaaatgcacagttttttttt--aaaaagagagaaaaggagctag 622
Query: 425 tatttgatttataggattattcatctagtttctatccctctcaaga 470
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatttgatttataggattattcatctagtttctatccctctcaaga 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space: 394680
Effective search space used: 394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_b12.g1 MSMg01no193_b12.g1 CHROMAT_FILE:
MSMg01no193_b12.g1 PHD_FILE: MSMg01no193_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:19 2005
(623 letters)
>mm_chr19_19348329_19349351
Length = 1023
Score = 1152 bits (596), Expect = 0.0
Identities = 608/612 (99%)
Strand = Plus / Minus
Query: 8 attctctaaaacttcaagtaaaatacaattttctcctttaaattgtcccttggatatttt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 attctctaaaacttcaagtaaaatacaattttctcctttaaattgtcccttggatatttt 760
Query: 68 ggtgccaatgatacaaagtctgattatcaaagaggtatatttcatagttacctattgagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggtgccaatgatacaaagtctgattatcaaagaggtatatttcatagttacctattgagg 700
Query: 128 tcctgatttattagaacagttacaaataaaatttaatcatatgacaaagcttgagttgta 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tcctgatttattagaacagttacaaataaaatttaatcatatgacaaagcttgagttgta 640
Query: 188 agttcaacttgtggtacacagaacttcagaataaacttcaaatgaaactgacctttataa 247
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agttcgacttgtggtacacagaacttcagaataaacttcaaatgaaactgacctttataa 580
Query: 248 gtaagtttcatggtaaggctaatgcagatgacagaaaatgttataaaataagatgtcatc 307
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtaagtttcatggtgaggctaatgcagatgacagaaaatgttataaaataagatgtcatc 520
Query: 308 tacatccttttgtgagatatcttttctagatactctggcagtagcctctataattgaagc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tacatccttttgtgagatatcttttctagatactctggcagtagcctctataattgaagc 460
Query: 368 aatgtgtatgtttctcaatgttttgtgtagtagtattgaatactgctattttaaatttaa 427
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 459 aatgtgtatgtttctcaatgttttgtatagtagtattgaatactgctattttaaacttaa 400
Query: 428 aacatatagtattatttctcaatctcataatttttctcatacttactatttaataaaaaa 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aacatatagtattatttctcaatctcataatttttctcatacttactatttaataaaaaa 340
Query: 488 caataaaattagacattattacttgagtttgtatgttttaacagaacatactgacttctt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caataaaattagacattattacttgagtttgtatgttttaacagaacatactgacttctt 280
Query: 548 acttggaaagataaatattttctagcacatttgaactcacatcaatgtttgttgtttgtg 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 acttggaaagataaatattttctagcacatttgaactcacatcaatgtttgttgtttgtg 220
Query: 608 gactatcactta 619
||||||||||||
Sbjct: 219 gactatcactta 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
