BAC Information

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BAC

Clone NameMSMg01-198A06
Chromosome19 (Build37)
Map Location 13,444,220 - 13,444,535
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467
Downstream geneOlfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198A06.T7 (MSMg01no198_a06.b1)MSMg01-198A06.TJ (MSMg01no198_a06.g1)
ACCAG385515AG385516
length740750
length of high quality
(start - end)
320 (45 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no198_a06.b1 PHD_FILE: MSMg01no198_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:06 2005CHROMAT_FILE: MSMg01no198_a06.g1 PHD_FILE: MSMg01no198_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGTTCTTATAAAGTAGAAGAAGCAAGGAAAAAAAGAGCTTAGCT
AGTTCTCTAAGAGGCCATCTACATGTGCATTGTTTCATGAAGATGTGGGA
AGGGTTTCATTGACTCCTTTGAGAATGAAAGGCACACTGAAGACAATTTC
ACCTACTGAGAAGCTATTCTGAGAGCCTCATTTATTAATTAAGTTTGAGG
CTTAGATTCCAACATATAAATTTTTATAAAATTCATGATTTCAAAGCATA
GCATACATTTCCTGATATCTGTAGCGTACTTAAATAATGTATTATTAGCT
CCCAATCATTGTATTTTATGCTCTCCCCCACCCCTAAGTAACATTATGGT
TTGTCATGTTCTCTTTCCCACTGAATATAGATTCATTGGTGCTTGATACA
CTTTTGAATGTTAAGCCTTTAAACACCAGAAACAATTCAATATGAGTTCA
TCTCTAAAAGTATGGCCTTCAAGTCCCAATCTTACAATCAAATTCTGGTT
AGGTAGTGATATAAACACCCCTTGAATTTTCATTTATTTATTATAAAGAA
TCAGCTTTTCTGGTTATGGAGTATGACAAGGTCACATGTGCAAGTATGCC
AGAATGCTTGAGGTTAAATAAAGCATATGCTGCTGAAAATTTGTCCTACC
CAACTACATTTTCTTTCTTTAAGTTCTTTACTCATGAACN
TCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTTAAGGGATATCTTCGTTG
TTTCCTGCTTTTGGCTATTACACACAAGTCTCCTATAAACATGTTGGAAC
ACATGTGTTTGTGGTATGTTTGAGTATCTTTTGGGTATATACCCAAGAGA
GGTATAACTCTGTCTTCAGGTAGAACTATTTCCAATTTTCTGAGGAGCCA
CCAAATAGATTTCCAGAGTGGTTGTACCTGTTTGCAATTCCCACCAGCAA
TGGGGGAATATTCCTCTTTCTCCATATGCTTGCCAGCACCTGCTGTCACC
TGAGTTTTTGATCCTAGACTTTCTGACACGCGCGCCGCGGAATCCCAGAG
TCATTTTTATTTGTACTTCTCTGATGACTAAGGACTTTGAACAATTCTCT
AAGTGCTTCTTGGCCATTCAATATTCTTCTGTTGTGAATTCTCTGTTTAA
TTCTGTACCCCATGTTTAATAGGTTTATTTGGGTTTTTGAAAGTTAAATT
CTTGAGTTCTTTATGTATTCTGGATATTAGCCCTCTATCAGATGTAGGGT
TAATGAAGATTTTTTATCTCTGATCATTCGAAGACTTTTATGAAGGAGCG
TTGGGTTTTTCCAAGGATTTTTCAGCATCTACCAATATGACTCTGTGTTT
TTTTTCCCCCCATTTTATTTTTATGCCGAATAATTTGCTGACCCTCTTCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_a06.b1 MSMg01no198_a06.b1 CHROMAT_FILE:
MSMg01no198_a06.b1 PHD_FILE: MSMg01no198_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:06 2005
         (320 letters)



>mm_chr19_13444016_13444735
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgttcttataaagtagaagaagcaaggaaaaaaagagcttagctagttctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgttcttataaagtagaagaagcaaggaaaaaaagagcttagctagttctct 264

                                                                       
Query: 65  aagaggccatctacatgtgcattgtttcatgaagatgtgggaagggtttcattgactcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaggccatctacatgtgcattgtttcatgaagatgtgggaagggtttcattgactcct 324

                                                                       
Query: 125 ttgagaatgaaaggcacactgaagacaatttcacctactgagaagctattctgagagcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgagaatgaaaggcacactgaagacaatttcacctactgagaagctattctgagagcct 384

                                                                       
Query: 185 catttattaattaagtttgaggcttagattccaacatataaatttttataaaattcatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttattaattaagtttgaggcttagattccaacatataaatttttataaaattcatga 444

                                                                       
Query: 245 tttcaaagcatagcatacatttcctgatatctgtagcgtacttaaataatgtattattag 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 tttcaaagcatagcatacatttcctgatatctgtagtgtacttaaataatgtattattag 504

                           
Query: 305 ctcccaatcattgtat 320
           ||||||||||||||||
Sbjct: 505 ctcccaatcattgtat 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)