BAC Information

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BAC

Clone NameMSMg01-199M01
Chromosome19 (Build37)
Map Location 59,079,936 - 59,181,098
singlet/doubletdoublet
Overlap gene4930506M07Rik, LOC668626
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik
Downstream geneVax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199M01.T7 (MSMg01no199_m01.b1)MSMg01-199M01.TJ (MSMg01no199_m01.g1)
ACCAG386571AG386572
length749735
length of high quality
(start - end)		375 (50 - 424)651 (85 - 735)
definitionCHROMAT_FILE: MSMg01no199_m01.b1 PHD_FILE: MSMg01no199_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:25 2005CHROMAT_FILE: MSMg01no199_m01.g1 PHD_FILE: MSMg01no199_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,180,730 - 59,181,098)(59,079,936 - 59,080,586)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTATTGGGTAGCATCTAGCCTGGGGAGTAGAGTTTTAGAAA
GCTGAGCATGCTAAGAACTGTGGATTGTGTTTGTTAAAATGGACCAAAGG
ACTAGGCAAAGGAGAACAGGGACGTGTACGTGATATCAGGACACAGGCAG
ACACATTCATGGGTGCATTGGTTCTTAGGAGGAAAAACTGATTTTTGAAA
AAAAATTGTGGAAATTGATTTTCTTAAAGCTCTCAACATTTGTAATTCCT
ATGGTGTGTCTTTTAAGTACCCTCAAAGATAGTGAGTCTTGGATTGGTTA
TCAATGGTGTACTGATTATTTAGTAATTAAACATTAATCTAAATATATTG
GCTTATGAGGGTTGGGTGTGTGCGTGTGTGTGTCTTTTTCTCTTTTTTTT
TTCTCTTTTTTCCTCTTTTTCCTTTCCTCTTTTTCTTTTCTCCTTTTTCC
CCTTTCTCTTTCCTTTTCTTCCCCCCTTTCTCTTTCTTTTTCCCCCTCTC
CCTCCCCTCCCTTCTCCCCTCTCTTCCTCTCTCTTTTTTTCCTTTTCCCC
TTTCTCTCTTTTCCCTTCCCTCTTTCTCCCTTCCTTCCTTTTTCTTTTTT
TTTTCCTTTTAGCTCTTTTTTCCCTCCTTCCCCTTTTTTCTCCCCTCTCC
CCTTCCCTCTCCCGTTTTCCCCTTTCCCTTTCCTCTCTCTCTTCCTCTC

CCAAAANCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCAGCTGACACAC
GGAAGCTAAGTGCCCACTGAGACCTAGGCTAGATGGCAGACTCACAGTCT
GCCTGATCAGTGTTGAACTCTAGCTTTAAACAGATATGATGTCTGTACTT
CTGGGGAGAGATGGCTAAGCTCACAAAGGCTGCCTTCTAGATGAAGAGGA
CCACAGTATACCCAAAACTAACCAGTGCTTGTTTCAGGTCTAACTCAGGT
CTTCTTTCCTGAGAAGACTTCATGTGGACCTGGGTAGCCATTCCTCATCT
CTGAGTCCCTAAGGGAACACCAGAGTTTACAAGTTTCTATTACCCTCAAC
TCTGTAGCACCAAATGGCCGAATCACTGCTACATTGGTAAGTATAATCTG
ACTTCAAAGACAATTCTGTCCTCAGAGGCTATTGGAAAACTAAGAATTAA
AATGTCTCCATGTGGAACATGATTCAGACCCAAGAGTCATCTTTCCACAG
CCGTCTTAGTTACTTTTTAGTAACTCTCTCTCATTGTTGCAACAATGAGA
GAAAAAACAAAGCCTCCTGAGGAAGGCAGAGTTTCTTTAGCTCAGTACAA
GAGTAAACCCATCACTGTGGGGGAGGGAGGCACTTGTCCTCTTATTCAGC
CTAGCCAGCTCCAGGGCCAGCAACAGTTGCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_m01.b1 MSMg01no199_m01.b1 CHROMAT_FILE:
MSMg01no199_m01.b1 PHD_FILE: MSMg01no199_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:25 2005
         (375 letters)



>mm_chr19_59180526_59181300
          Length = 775

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctattgggtagcatctagcctggggagtagagttttagaaagctgagcatgcta 64
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 573 gaattcctgttgggtagcatctagcctggggagtagagttttagaaagccgagcatgcta 514

                                                                       
Query: 65  agaactgtggattgtgtttgttaaaatggaccaaaggactaggcaaaggagaacagggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agaactgtggattgtgtttgttaaaatggaccaaaggactaggcaaaggagaacagggac 454

                                                                       
Query: 125 gtgtacgtgatatcaggacacaggcagacacattcatgggtgcattggttcttaggagga 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 453 gtgtacgtgatatcaggacacaggcagacacattcataggtgcattggttcttaggagga 394

                                                                       
Query: 185 aaaactgatttttgaaaaaaaattgtggaaattgattttcttaaagctctcaacatttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaaactgatttttgaaaaaaaattgtggaaattgattttcttaaagctctcaacatttgt 334

                                                                       
Query: 245 aattcctatggtgtgtcttttaagtaccctcaaagatagtgagtcttggattggttatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aattcctatggtgtgtcttttaagtaccctcaaagatagtgagtcttggattggttatca 274

                                                                       
Query: 305 atggtgtactgattatttagtaattaaacattaatctaaatatattggcttatgagggtt 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 273 atggtgtactgattatttagtaattaaacatcaatctaaatatattggcttatgagggtt 214

                    
Query: 365 gggtgtgtg 373
           |||||||||
Sbjct: 213 gggtgtgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no199_m01.g1 MSMg01no199_m01.g1 CHROMAT_FILE:
MSMg01no199_m01.g1 PHD_FILE: MSMg01no199_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:25 2005
         (651 letters)



>mm_chr19_59079736_59080786
          Length = 1051

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccagctgacacacggaagctaagtgcccactgagacctaggctagatggcagactca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actccagctgacacacggaagctaagtgcccactgagacctaggctcgatggcagactca 260

                                                                       
Query: 61  cagtctgcctgatcagtgttgaactctagctttaaacagatatgatgtctgtacttctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtctgcctgatcagtgttgaactctagctttaaacagatatgatgtctgtacttctgg 320

                                                                       
Query: 121 ggagagatggctaagctcacaaaggctgccttctagatgaagaggaccacagtataccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagatggctaagctcacaaaggctgccttctagatgaagaggaccacagtataccca 380

                                                                       
Query: 181 aaactaaccagtgcttgtttcaggtctaactcaggtcttctttcctgagaagacttcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactaaccagtgcttgtttcaggtctaactcaggtcttctttcctgagaagacttcatg 440

                                                                       
Query: 241 tggacctgggtagccattcctcatctctgagtccctaagggaacaccagagtttacaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggacctgggtagccattcctcatctctgagtccctaagggaacaccagagtttacaagt 500

                                                                       
Query: 301 ttctattaccctcaactctgtagcaccaaatggccgaatcactgctacattggtaagtat 360
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 501 ttctattaccctcaactctgtagcaccaaatggctgaatcactgctacgttggtaagtat 560

                                                                       
Query: 361 aatctgacttcaaagacaattctgtcctcagaggctattggaaaactaagaattaaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctgacttcaaagacaattctgtcctcagaggctattggaaaactaagaattaaaatg 620

                                                                       
Query: 421 tctccatgtggaacatgattcagacccaagagtcatctttccacagccgtcttagttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccatgtggaacatgattcagacccaagagtcatctttccacagccgtcttagttact 680

                                                                       
Query: 481 ttttagtaactctctctcattgttgcaacaatgagagaaaaaacaaagcctcctgaggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttagtaactctctctcattgttgcaacaatgagagaaaaaacaaagcctcctgaggaa 740

                                                                       
Query: 541 ggcagagtttctttagctcagtacaagagtaaacccatcactgtgggggagggaggcact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcagagtttctttagctcagtacaagagtaaacccatcactgtgggggagggaggcact 800

                                                              
Query: 601 tgtcctcttattcagcctagccagctccagggccagcaacagttgcccaca 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtcctcttattcagcctagccagctccagggccagcaacagttgcccaca 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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