BAC Information

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BAC

Clone NameMSMg01-201B13
Chromosome19 (Build37)
Map Location 12,553,892 - 12,554,223
singlet/doubletsinglet
Overlap geneDtx4
Upstream geneMs4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1
Downstream geneEG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201B13.T7 (MSMg01no201_b13.b1)MSMg01-201B13.TJ (MSMg01no201_b13.g1)
ACCAG386782AG386783
length703705
length of high quality
(start - end)		362 (46 - 407)333 (367 - 699)
definitionCHROMAT_FILE: MSMg01no201_b13.b1 PHD_FILE: MSMg01no201_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:59 2005CHROMAT_FILE: MSMg01no201_b13.g1 PHD_FILE: MSMg01no201_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTCGCTCTTCAGTTGTTAAGAGCATCTGCAACAGCTGTTGAC
AATCATCCCAAGTAGGCTGATGAGAGAACATAAGGAACTCCACCAACCCT
GTGAGGCATTGGGGATCCTGAGAAAGGGGGTGGTTAGTTTTCCAGTTATA
AAGATCAGCAGAGGAAAATGACCAGTACTGAAGCGTTTAAAGTTTGGGCG
GGTCCAGAGTCCACCCAGATTCTGTGCTCTGCGGCTCCATGTACCCACAG
CGGTCCAACTCTCGACGCCCTGAGGGGTTTGAGGTTCCCTCAGCAGCTGG
GATTGAGGCTGTGGATAAGGGGGAGGTAGTGGACTAGGCCACTCAGGAGG
CTTTATAGACCCCCCCCCACCCAATTTAGCTGGTGGNTGCGATTTGGGAG
AAGCCTTTAACTTTTCTTGTAACATGAGAGTACCACCACAATTTTGAGGA
GCAAAATCCACTTTTAACAGTGTTTATAACCTATTTTTTTTAATATGAAC
TCTAAAACATTTTTTGTTACTAATGTTTGGCTGCCTGCTCTTGCACTCTA
ATTTAAGAATATGTAATCTGCCAATATTTTTAAAAGATAATATCTTAACT
CCTACCTCAAATCTTTATTCACTAAATTTATTACCCCCTTTTTTTTTTTT
TTG

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGAAGTCTCACATCTCCCCA
GTTTTCTACACTGGTTTGAATCAGAATTCTTCCCCAAGGCTCATGGATTA
AAGACTTGGCTACCTGCTGAGAAGATTTTGTAGAGAGACTGAATAATGGG
GACTGGAACCTTATTGGTAGATTAAGCTACTGACATAGTGACCTGAAGGC
AGCCAAGAACTGTGAAGGACAGGAAGAAAAGGACAAGACAGAAGAGGAGG
TGGAGAAAGAAGGACACACGCAGAGGCTACATGATATACCCATGCAAGGC
TTGCCCTCTTTGATGTACTCCCTCTGTCACACCTCACATGCTTGCTACCA
CAGTTTTGCCTCACCACAAGCACACAGCAAAGAAGTTGTCAACCACAGAC
TAACTTCCTGAAGTGAAGAGTCGAAAACAAACACAAACAAAAAACAAAAC
AAAACCAGTCTTTCCTTTTCCTTTTTATCATTTCCCCATGCATTATGTCA
TAGCCACAAAGACTGATGTGAATATGGACTGCAGACGGAGACAGTAATAT
AAAAGCTTGTAGTCTCGCAGCAGGACCAGGTGAAGTGTCACCAAGTAGGG
CAGACAAGAACCCTCAAGAGATCCCAGACAGCANAGGTAATTCTCAGGCT
CGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_b13.g1 MSMg01no201_b13.g1 CHROMAT_FILE:
MSMg01no201_b13.g1 PHD_FILE: MSMg01no201_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:59 2005
         (333 letters)



>mm_chr19_12553692_12554424
          Length = 733

 Score =  559 bits (289), Expect = e-164
 Identities = 321/332 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccctctgtcacacctcacatgcttgctaccacagttttgcctcaccacaagcacaca 60
           |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 201 actccctccgtcacacctcacatgcttgctaccacggttttgcctcatcataagcacaca 260

                                                                       
Query: 61  gcaaagaagttgtcaaccacagactaacttcctgaagtgaagagtcgaaaacaaacacaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gcaaagaagttgtcaaccacagactaacttcctgaagtgaagagtcaaaaacaaacacaa 320

                                                                       
Query: 121 acaaaaaacaaaacaaaaccagtctttccttttcctttttatcatttccccatgcattat 180
           |||||||||||||| ||||||||||||||||||||||| ||||  |||||||||||||||
Sbjct: 321 acaaaaaacaaaaccaaaccagtctttccttttcctttctatcgcttccccatgcattat 380

                                                                       
Query: 181 gtcatagccacaaagactgatgtgaatatggactgcagacggagacagtaatataaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatagccacaaagactgatgtgaatatggactgcagacggagacagtaatataaaagc 440

                                                                       
Query: 241 ttgtagtctcgcagcaggaccaggtgaagtgtcaccaagtagggcagacaagaaccctca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttgtagtctcgcagcaggaccaggtgaagtgtcaccaggtagggcagacaagaaccctca 500

                                           
Query: 301 agagatcccagacagcanaggtaattctcagg 332
           ||||||||||||||||| ||||||||||||||
Sbjct: 501 agagatcccagacagcaaaggtaattctcagg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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