BAC Information

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BAC

Clone NameMSMg01-203O21
Chromosome19 (Build37)
Map Location 54,469,877 - 54,470,157
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203O21.T7 (MSMg01no203_o21.b1)MSMg01-203O21.TJ (MSMg01no203_o21.g1)
ACCAG388503AG388504
length801777
length of high quality
(start - end)
257 (45 - 301)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no203_o21.b1 PHD_FILE: MSMg01no203_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:16 2005CHROMAT_FILE: MSMg01no203_o21.g1 PHD_FILE: MSMg01no203_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCATGTCTTTTCTGCCATGATGTACACAGATCCCTTGAAACTGT
GTACATCACAGCCCATATGACCTGACCCATACTGTTTGTATTAGTTATTT
TAACACCATGACGAACATAATATCTGAGAGAAACAATTTATCAGAGGAAA
TATTTACTTTGGCTTATAGTTTCAGATAGTTGTGGTCTGCCATGACAAGG
AAGGCATGATGGAGATGATGGTAGTGGGTATGGAGCAGTATGGAGATTCC
TCCTGTTATGCTGATTTTTTTTTTTTGCGTACATCCATACCCCACCACCG
TGCCCTTTTTTTTTATCGCCCCCCCCCCTCTCCCCTTATTTCTCATTTAT
AGGTTTCTTGTTTCCCCCCCCCCAAAAAAAAAAACGCCTTCTTTGGGCCG
CGTTTCCTTCCCCCTCTTCTCCCGTTCCTTCTCCTTTTTTTCCTTCCCTC
CTCTCCAACTCTTCTATACATACTACCTTCCTCTTTTTCTTTTTCGCTCC
CCCTTTTTTCACCCCTTTCTCTTTTTCCCCCTTCCTTTCCCCTCTCTTTT
CCCCTCCTTTTCCCTTTTTTTTTCTTCCCTTTTCCTTTTTCCCTCCTTTT
CTCTTTTTCCCCTTTTCTCCCCTTTTTTCTTTTCCCCCCTTTTTCCTCTC
TTCCTTTCCCCTTTCTCTCTCCCCCTCTTTTATCTCCCCCTCTTATTTCC
CCGTTTATTCTCCCCTCCCTTATCTCTTCTTTTTCTCCTCGCTCTCTCTC
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATAAGGTCAGCTGTGGGAA
ACTACAGTGGGAATGTTATAGCCAGTGTCCCCAGGCCACATCTGCACAGC
ACAGATTCATTATGGAAGACAGAACCAGACCCAGCTTGCCACATGAGCAG
ACTGCTCTACATCTTCCAAGTCTAGGCTGTGGCACAACGAGATCTGTATT
AGGCCTTGACTTTAAAAGACCATGGAAAGAGGCCTGCTGCCAACGGGCTT
CCAAGGCTGCTCTTTAATACACATTCGTATAAATTAAAGCAAACAAAACA
AAACAAATTTTTTTTTTCCCCCCCTCCCCCCGATGAAGAAAAGCAGGGCC
ATTGGCCCATACTCCCCCCAAGAACAAAAAAAAGAAGTAGGGCGGAGAGT
GAGATCAAAACATGACAGCATTGTCACCGAGGCCACCCCAGTGGCACTGG
TGCCTACCCACAAACAGTAAGGCCTCTTAGACCCTACTCCGTCAACCCGT
TTTACTCTCCAGAAGCCTTTGATGTTCTGTCGCTATCCCTTGACATCTCT
TTTGCGCTGCACCTCCCCCATTGTCCTCCATCCCCCGCCACATACACCGC
CCGTCATCCTTTTCTCTTTGCCCCTTTTTGCCCTTCCCGTCCCTTTCTTC
TCCTTTTCCCCCCTTTTCCATCACCCTGCCCCCCTTTCCTTTATTTTTAC
GCTCCGTTCCTTCCCCGCCCTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_o21.g1 MSMg01no203_o21.g1 CHROMAT_FILE:
MSMg01no203_o21.g1 PHD_FILE: MSMg01no203_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:16 2005
         (284 letters)



>mm_chr19_54469677_54470359
          Length = 683

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaataaggtcagctgtgggaaactacagtgggaatgttatagccagtgtccccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 481 tcagaaataaggtcagctgtgggaaactacagtgggaatgttatagaaagtgtccccagg 422

                                                                       
Query: 61  ccacatctgcacagcacagattcattatggaagacagaaccagacccagcttgccacatg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccacatctgcatagcacagattcattatggaagacagaaccagacccagcttgccacatg 362

                                                                       
Query: 121 agcagactgctctacatcttccaagtctaggctgtggcacaacgagatctgtattaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agcagactgctctacatcttccaagtctaggctgtggcacaacgagatctgtattaggcc 302

                                                                       
Query: 181 ttgactttaaaagaccatggaaagaggcctgctgccaacgggcttccaaggctgctcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgactttaaaagaccatggaaagaggcctgctgccaacgggcttccaaggctgctcttt 242

                                                     
Query: 241 aatacacattcgtataaattaaagcaaacaaaacaaaacaaa 282
           |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 aatacacattcgtataaattaaagcaaacaaa-caaaacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)