Query= MSMg01no211_m10.b1 MSMg01no211_m10.b1 CHROMAT_FILE:
MSMg01no211_m10.b1 PHD_FILE: MSMg01no211_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:13 2005
(131 letters)
>mm_chr19_54930301_54930831
Length = 531
Score = 232 bits (120), Expect = 6e-66
Identities = 126/128 (98%)
Strand = Plus / Plus
Query: 1 tgaattccatataagtgggggtaggtgctggctgtgaattccatataagtggaaccagtt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaattccatataagtgggggcaggtgctggctgtgaattccatataagtggaaccagtt 260
Query: 61 gctctgaactctgtaaaacaaggacagatacagattccaccagatgaattgtgatgcaaa 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gctctgaactctgtaaaacaaggacagatacagattccaccagaggaattgtgatgcaaa 320
Query: 121 tcgaagga 128
||||||||
Sbjct: 321 tcgaagga 328
Score = 58.7 bits (30), Expect = 1e-13
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 aggtgctggctgtgaattccatataagtgg 52
||||||||||||||||||||||||||||||
Sbjct: 86 aggtgctggctgtgaattccatataagtgg 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space: 64329
Effective search space used: 64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no211_m10.g1 MSMg01no211_m10.g1 CHROMAT_FILE:
MSMg01no211_m10.g1 PHD_FILE: MSMg01no211_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:13 2005
(378 letters)
>mm_chr19_55086216_55086992
Length = 777
Score = 646 bits (334), Expect = 0.0
Identities = 365/380 (96%), Gaps = 9/380 (2%)
Strand = Plus / Minus
Query: 3 ggatagccaggggtacatagcgaggactcctctttattacacattgtagaggaatacgat 62
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggatagccagggctacatagtgaggactcctctttattacacattgtagaggaatacgat 518
Query: 63 gcttcctcctcaggattctactgcccaggatttctgtaacactgcaaatgacaggacaat 122
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcttcctccgcaggattctactgcccaggatttctgtaacactgcaaatgacaggacaat 458
Query: 123 gctagaaggggcgtttgttgactccctctgcctaccttcctgaagaaagggaagcgtttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gctagaaggggcgtttgttgactccctctgcctaccttcctgaagaaagggaagcgtttg 398
Query: 183 cccagtgacagagagcttgatccatcctgtgctgtgttttccctgagcataacttctcct 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 397 cccagtgacagagagcttgatccatcctgtgctgtgttttccctgagcataactcctcct 338
Query: 243 gcagggcccttcctaggtctcctgggtcttcactctgagggcgagctcctgggcctttca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcagggcccttcctaggtctcctgggtcttcactctgagggcgagctcctgggcctttca 278
Query: 303 tgagtgctcagcgtgtgtttgta----tttttttgctctggcacagcactgaggaatctg 358
||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 277 tgagtgctcagtgtgtgtttgtaggcctt-----gctctggcacagcactgaggaatctg 223
Query: 359 ccaggaagaaatctgcattt 378
||| ||||||||||||||||
Sbjct: 222 ccaagaagaaatctgcattt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 777
Length adjustment: 9
Effective length of query: 369
Effective length of database: 768
Effective search space: 283392
Effective search space used: 283392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
